32 lines
757 B
Ruby
32 lines
757 B
Ruby
|
require 'formula'
|
||
|
|
|
||
|
|
class GmapGsnap < Formula
|
||
|
|
homepage 'http://research-pub.gene.com/gmap'
|
||
|
|
url 'http://research-pub.gene.com/gmap/src/gmap-gsnap-2012-04-10.tar.gz'
|
||
|
|
md5 'acd1731524eb3517f6e82147c646d27d'
|
||
|
|
version "2012-04-10"
|
||
|
|
|
||
|
|
depends_on "samtools"
|
||
|
|
|
||
|
|
def install
|
||
|
|
ENV['CC'] = "#{ENV.cc} -O3 -m#{MacOS.prefer_64_bit? ? 64 : 32}"
|
||
|
|
system "./configure", "--prefix=#{prefix}"
|
||
|
|
system "make"
|
||
|
|
system "make install"
|
||
|
|
end
|
||
|
|
|
||
|
|
def caveats; <<-EOF.undent
|
||
|
|
You will need to either download or build indexed search databases.
|
||
|
|
See the readme file for how to do this:
|
||
|
|
http://research-pub.gene.com/gmap/src/README
|
||
|
|
|
||
|
|
Databases will be installed to:
|
||
|
|
#{share}
|
||
|
|
EOF
|
||
|
|
end
|
||
|
|
|
||
|
|
def test
|
||
|
|
system "#{bin}/gsnap --version"
|
||
|
|
end
|
||
|
|
end
|