2017-09-25 06:44:46 +00:00
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class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.3.3.tar.gz"
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sha256 "7d4d455a4af70d02a1ae4ce1a0b21b7d3018737dd197579e1a5612a5c01887c8"
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2017-09-25 08:00:05 +00:00
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bottle do
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sha256 "3fe6f32e4b86211b5f2ba0f75a1f3865501b70ed2d474c54b335b24ab93313f3" => :high_sierra
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sha256 "3439ab26ff7b2952b7b39045d24988278d867d6f5ee2f3f61a4bbf787724a9c9" => :sierra
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sha256 "2ff5ef492d7df5d5de27751ff878937edc80d5e495213a868d48d994877a6151" => :el_capitan
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end
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2017-09-25 06:44:46 +00:00
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depends_on "tbb"
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def install
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tbb = Formula["tbb"]
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system "make", "install", "WITH_TBB=1", "prefix=#{prefix}",
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"EXTRA_FLAGS=-L #{tbb.opt_lib}", "INC=-I #{tbb.opt_include}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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