2017-09-24 00:19:17 +00:00
|
|
|
class Bedtools < Formula
|
|
|
|
|
desc "Tools for genome arithmetic (set theory on the genome)"
|
|
|
|
|
homepage "https://github.com/arq5x/bedtools2"
|
|
|
|
|
url "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz"
|
|
|
|
|
sha256 "15db784f60a11b104ccbc9f440282e5780e0522b8d55d359a8318a6b61897977"
|
|
|
|
|
|
2017-11-23 15:10:23 +00:00
|
|
|
bottle do
|
|
|
|
|
cellar :any_skip_relocation
|
|
|
|
|
sha256 "b1c22d44db6adf632fd5a2b71b21edfb4d2a097871e0609fe447f5b673db4fb1" => :high_sierra
|
|
|
|
|
sha256 "7d17967daf92bbcaabd2bfec258af5cd7fbd0d5a9918470ba2484189f5fd76bc" => :sierra
|
|
|
|
|
sha256 "5bd284164362a938830f9bbe1a9c964da513a1819ba9f9fef2a807c528b7e89c" => :el_capitan
|
|
|
|
|
end
|
|
|
|
|
|
2017-09-24 00:19:17 +00:00
|
|
|
# Remove for > 2.26.0
|
|
|
|
|
# 24 Sep 2017 "strandqueue: de-const for stricter Xcode 9 rules"
|
|
|
|
|
if DevelopmentTools.clang_build_version >= 900
|
|
|
|
|
patch do
|
|
|
|
|
url "https://github.com/arq5x/bedtools2/commit/c0b7d934cc61ad6c83eb3d99374263e7ec51722d.diff?full_index=1"
|
|
|
|
|
sha256 "b37113ff55b916787f29c12dece8b7f4289de30427c3a22a8cb332aa32d936dd"
|
|
|
|
|
end
|
|
|
|
|
end
|
|
|
|
|
|
|
|
|
|
def install
|
|
|
|
|
system "make"
|
|
|
|
|
system "make", "install", "prefix=#{prefix}"
|
|
|
|
|
prefix.install "RELEASE_HISTORY"
|
|
|
|
|
end
|
|
|
|
|
|
|
|
|
|
test do
|
|
|
|
|
(testpath/"t.bed").write "c\t1\t5\nc\t4\t9"
|
|
|
|
|
assert_equal "c\t1\t9", shell_output("#{bin}/bedtools merge -i t.bed").chomp
|
|
|
|
|
end
|
|
|
|
|
end
|
