2017-12-18 21:10:17 +00:00
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class Bwa < Formula
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desc "Burrow-Wheeler Aligner for pairwise alignment of DNA"
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homepage "https://github.com/lh3/bwa"
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2017-12-31 09:32:49 +00:00
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url "https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2"
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sha256 "de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd"
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2017-12-18 21:10:17 +00:00
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2017-12-31 09:18:49 +00:00
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bottle do
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cellar :any_skip_relocation
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2017-12-31 09:36:44 +00:00
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sha256 "02da3eecd6569c193a55436f705c8d351d052e44b79a43d6afc50f7308603a73" => :high_sierra
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sha256 "4db97125930b495fc34b6d161bea57171ac4bf2a5bf48ca1088a69a594874710" => :sierra
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sha256 "bee09d138e9d8f45c12d6c99b48a3e6891b6e4d3f5c6a6847bfeaa28afc2f362" => :el_capitan
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2017-12-31 09:18:49 +00:00
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end
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2017-12-18 21:10:17 +00:00
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def install
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system "make"
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# "make install" requested 26 Dec 2017 https://github.com/lh3/bwa/issues/172
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bin.install "bwa"
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man1.install "bwa.1"
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end
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test do
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(testpath/"test.fasta").write ">0\nAGATGTGCTG\n"
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system bin/"bwa", "index", "test.fasta"
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assert_predicate testpath/"test.fasta.bwt", :exist?
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assert_match "AGATGTGCTG", shell_output("#{bin}/bwa mem test.fasta test.fasta")
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end
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end
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