2018-06-20 16:11:07 +00:00
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class Beagle < Formula
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desc "Evaluate the likelihood of sequence evolution on trees"
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homepage "https://github.com/beagle-dev/beagle-lib"
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url "https://github.com/beagle-dev/beagle-lib/archive/v3.0.2.tar.gz"
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sha256 "59a7081b61ead0a5738e813c6fcfb614d2c5bb49c29b28609de8e2b51bea3ec0"
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2018-06-20 17:46:21 +00:00
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bottle do
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cellar :any
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sha256 "67d0ab1ff1e002ee1e7cd8c2c115e0b99c48f37e3f19f960a172c4ef5ac72689" => :high_sierra
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sha256 "4fa457aa7ce867b6147d07c9a8b1043e69a45cd1f3190566d1697e8acdf08415" => :sierra
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sha256 "9bd4cc062508f497135833251d2e12dca80ed702dcd675e6374719bef33e42e2" => :el_capitan
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end
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2018-06-20 16:11:07 +00:00
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "doxygen" => :build
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depends_on :java => [:build, :test]
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depends_on "libtool" => :build
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def install
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system "./autogen.sh"
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}",
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"--without-cuda",
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"--disable-libtool-dev"
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system "make", "install"
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end
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test do
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(testpath/"test.cpp").write <<~EOS
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#include "libhmsbeagle/platform.h"
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int main() { return 0; }
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EOS
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(testpath/"T.java").write <<~EOS
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class T {
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static { System.loadLibrary("hmsbeagle-jni"); }
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public static void main(String[] args) {}
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}
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EOS
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system ENV.cxx, "-I#{include}/libhmsbeagle-1",
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testpath/"test.cpp", "-o", "test"
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system "./test"
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system "javac", "T.java"
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system "java", "-Djava.library.path=#{lib}", "T"
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end
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end
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