2017-09-22 19:56:01 +00:00
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class Beast < Formula
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desc "Bayesian Evolutionary Analysis Sampling Trees"
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homepage "http://beast.bio.ed.ac.uk/"
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url "https://github.com/beast-dev/beast-mcmc/archive/v1.8.4.tar.gz"
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sha256 "de8e7dd82eb9017b3028f3b06fd588e5ace57c2b7466ba2e585f9bd8381407af"
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head "https://github.com/beast-dev/beast-mcmc.git"
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2017-09-23 01:43:41 +00:00
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bottle do
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cellar :any_skip_relocation
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2017-09-24 07:05:29 +00:00
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sha256 "7d04adbad7f141cc0e7465855a098e46c4c156e1ac59a400911e67ee1c62571d" => :high_sierra
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2017-09-23 01:43:41 +00:00
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sha256 "fd0b8225774ad857e296ca5fe8540ab21de86a5e951d963e2af5473f6e85a5e2" => :sierra
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sha256 "30fa27c365bed00f62c399e7724044bfc2eef0e211ca7ca41211d01446c7a27d" => :el_capitan
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end
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2018-01-10 15:37:04 +00:00
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depends_on "ant" => :build
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2017-09-22 19:56:01 +00:00
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depends_on :java => "1.7+"
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def install
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system "ant", "linux"
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libexec.install Dir["release/Linux/BEASTv*/*"]
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pkgshare.install_symlink libexec/"examples"
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bin.install_symlink Dir[libexec/"bin/*"]
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end
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test do
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cp pkgshare/"examples/clockModels/testUCRelaxedClockLogNormal.xml", testpath
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# Run fewer generations to speed up tests
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inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
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'chainLength="100000"'
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system "#{bin}/beast", "-beagle_off", "testUCRelaxedClockLogNormal.xml"
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%w[ops log trees].each do |ext|
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output = "testUCRelaxedClockLogNormal." + ext
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assert_predicate testpath/output, :exist?, "Failed to create #{output}"
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end
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end
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end
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