2018-01-10 01:55:18 +00:00
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class Augustus < Formula
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desc "Predict genes in eukaryotic genomic sequences"
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homepage "http://bioinf.uni-greifswald.de/augustus/"
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url "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.tar.gz"
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sha256 "f6470931e835d8da16288e501f95287df0f71f6bd6b6c8b49c3cf33c1e7f18e5"
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2018-01-19 14:02:23 +00:00
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bottle do
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cellar :any
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sha256 "628ec61d36ac8c0cfa088bf0aaf8facb59888d8df407027d6099385a97da9a5a" => :high_sierra
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sha256 "8e6f909d5feb3a6890935646d31b70d99f7faf9315c0613c4362af3d19912c1f" => :sierra
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sha256 "57d0cdab04164c968240245b95159b21e464d7988dd4063d758dbfbb93e1b25a" => :el_capitan
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end
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2018-01-10 01:55:18 +00:00
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depends_on "boost"
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def install
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# Prevent symlinking into /usr/local/bin/
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inreplace "Makefile", %r{ln -sf.*/usr/local/bin/}, "#ln -sf"
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# Compile executables for macOS. Tarball ships with executables for Linux.
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system "make"
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system "make", "install", "INSTALLDIR=#{prefix}"
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bin.env_script_all_files libexec/"bin", :AUGUSTUS_CONFIG_PATH => prefix/"config"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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cmd = "#{bin}/augustus --species=human test.fasta"
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assert_match "Predicted genes", shell_output(cmd)
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end
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end
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