2017-12-22 00:36:39 +00:00
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class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
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2018-03-16 20:40:06 +00:00
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url "https://github.com/bbuchfink/diamond/archive/v0.9.19.tar.gz"
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sha256 "fab783f51af9010666f2b569f438fb38843d0201fe0c0e167db5b70d12459e30"
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2017-12-22 00:36:39 +00:00
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2017-12-22 21:57:23 +00:00
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bottle do
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cellar :any_skip_relocation
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2018-03-16 21:14:58 +00:00
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sha256 "2bf4ea935582b1067d55fa7be055ee99672735ed8bc32895a0d324adb28bfc41" => :high_sierra
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sha256 "4bc9bfd4876ad1d275ab4fdec81281c5a451e09a1313b1c152ec57d90bee7b3b" => :sierra
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sha256 "1840af34d7791e348adaae0243674affd2610e4104df9cae5bc0cf5fa9b95d73" => :el_capitan
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2017-12-22 21:57:23 +00:00
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end
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2017-12-22 00:36:39 +00:00
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depends_on "cmake" => :build
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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