homebrew-core/Formula/bwa.rb

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class Bwa < Formula
desc "Burrow-Wheeler Aligner for pairwise alignment of DNA"
homepage "https://github.com/lh3/bwa"
url "https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2"
sha256 "de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd"
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bottle do
cellar :any_skip_relocation
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sha256 "6b07cef5ea1955d8a83e7b59ef8458a7604998f735f0eab85889fa3aedc7e953" => :mojave
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sha256 "02da3eecd6569c193a55436f705c8d351d052e44b79a43d6afc50f7308603a73" => :high_sierra
sha256 "4db97125930b495fc34b6d161bea57171ac4bf2a5bf48ca1088a69a594874710" => :sierra
sha256 "bee09d138e9d8f45c12d6c99b48a3e6891b6e4d3f5c6a6847bfeaa28afc2f362" => :el_capitan
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end
def install
system "make"
# "make install" requested 26 Dec 2017 https://github.com/lh3/bwa/issues/172
bin.install "bwa"
man1.install "bwa.1"
end
test do
(testpath/"test.fasta").write ">0\nAGATGTGCTG\n"
system bin/"bwa", "index", "test.fasta"
assert_predicate testpath/"test.fasta.bwt", :exist?
assert_match "AGATGTGCTG", shell_output("#{bin}/bwa mem test.fasta test.fasta")
end
end