2012-02-27 09:25:08 +00:00
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require 'formula'
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class Phyml < Formula
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homepage 'http://www.atgc-montpellier.fr/phyml/'
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url 'http://phyml.googlecode.com/files/phyml-20110919.tar.gz'
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2012-09-03 18:33:56 +00:00
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sha1 '6f6281af465d6daab0d7f774c1d0f62856b1af80'
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2012-02-27 09:25:08 +00:00
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def install
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# separate steps required
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system "./configure", "--prefix=#{prefix}"
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system "make"
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system "./configure", "--prefix=#{prefix}", "--enable-phytime"
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system "make"
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bin.install %w(src/phyml src/phytime)
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doc.install Dir['doc/phyml-manual.pdf']
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rm_rf Dir['examples/.svn']
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chmod 0644, Dir['examples/*']
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share.install Dir['examples/*']
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end
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def caveats; <<-EOS.undent
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Examples have been installed here:
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#{share}
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See options for phyml by running:
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phmyl --help
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PhyML must be run with the "-i" option to specify an input or it will
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segfault. Example:
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phyml -i #{share}/nucleic
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EOS
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end
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end
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