2017-09-29 20:58:34 +00:00
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class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "http://www.htslib.org/"
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2018-01-26 19:43:36 +00:00
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url "https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz2"
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sha256 "be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6"
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2017-09-29 20:58:34 +00:00
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2017-10-31 13:01:01 +00:00
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bottle do
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cellar :any
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2018-01-26 19:47:08 +00:00
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sha256 "8900715ec1050cface2b3921a8085e45980b07282c50794c13a6e0c61d2e1729" => :high_sierra
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sha256 "65781a76f4c67c53695cf99609b0951c832e7ab4703db7f183eae80f3852b4da" => :sierra
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sha256 "9bf6f3fab045f31e497b2e92ba1b2d7f54d4138a8519393b87f45df6f608751a" => :el_capitan
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2017-10-31 13:01:01 +00:00
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end
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2017-09-29 20:58:34 +00:00
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depends_on "xz"
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def install
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system "./configure", "--prefix=#{prefix}"
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system "make", "install"
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pkgshare.install "test"
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end
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test do
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sam = pkgshare/"test/ce#1.sam"
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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