2018-01-08 02:10:36 +00:00
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class Bioawk < Formula
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desc "AWK modified for biological data"
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homepage "https://github.com/lh3/bioawk"
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url "https://github.com/lh3/bioawk/archive/v1.0.tar.gz"
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sha256 "5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5"
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2018-01-08 15:50:21 +00:00
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bottle do
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cellar :any_skip_relocation
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sha256 "023f5cafaa31404e68b8fc6bcfbeee27e63eb5fbcab897d2f406fceda90ec9ff" => :high_sierra
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sha256 "154d44dd9ea56db8170127711e991950d487e379ae12df76332e4b7512f79fe8" => :sierra
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sha256 "df0810bc087f924cdddcdb73f00faf9772de9475e0e698c7af8a7d036b3a4c91" => :el_capitan
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end
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2018-01-08 02:10:36 +00:00
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def install
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# Fix make: *** No rule to make target `ytab.h', needed by `b.o'.
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ENV.deparallelize
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system "make"
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bin.install "bioawk"
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man1.install "awk.1" => "bioawk.1"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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cmd = "#{bin}/bioawk -cfastx '{print length($seq)}' test.fasta"
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assert_equal "70", shell_output(cmd).chomp
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end
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end
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