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beast 1.10.0

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depend on beagle
update test

Closes #29250.

Signed-off-by: ilovezfs <ilovezfs@icloud.com>
This commit is contained in:
Jonathan Chang 2018-06-20 14:50:00 -04:00 committed by ilovezfs
parent 74ac77cd06
commit 011f3c42d1
1 changed files with 5 additions and 4 deletions
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9
Formula/beast.rb
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@ -1,8 +1,8 @@
class Beast < Formula
desc "Bayesian Evolutionary Analysis Sampling Trees"
homepage "http://beast.community/"
url "https://github.com/beast-dev/beast-mcmc/archive/v1.8.4.tar.gz"
sha256 "de8e7dd82eb9017b3028f3b06fd588e5ace57c2b7466ba2e585f9bd8381407af"
url "https://github.com/beast-dev/beast-mcmc/archive/v1.10.0.tar.gz"
sha256 "5c77d0dab496489d1418d562a4ef90710f9ff70628a35e6089269605788953df"
head "https://github.com/beast-dev/beast-mcmc.git"
bottle do
@ -13,6 +13,7 @@ class Beast < Formula
end
depends_on "ant" => :build
depends_on "beagle"
depends_on :java => "1.7+"
def install
@ -23,13 +24,13 @@ class Beast < Formula
end
test do
cp pkgshare/"examples/clockModels/testUCRelaxedClockLogNormal.xml", testpath
cp pkgshare/"examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml", testpath
# Run fewer generations to speed up tests
inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
'chainLength="100000"'
system "#{bin}/beast", "-beagle_off", "testUCRelaxedClockLogNormal.xml"
system "#{bin}/beast", "testUCRelaxedClockLogNormal.xml"
%w[ops log trees].each do |ext|
output = "testUCRelaxedClockLogNormal." + ext