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snakemake 5.2.0

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Closes #30169.

Signed-off-by: ilovezfs <ilovezfs@icloud.com>
This commit is contained in:
ilovezfs 2018-07-17 02:46:27 -07:00
parent 802225bc02
commit 39e1c9a258
1 changed files with 2 additions and 25 deletions
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27
Formula/snakemake.rb
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@ -1,9 +1,8 @@
class Snakemake < Formula
desc "Pythonic workflow system"
homepage "https://snakemake.readthedocs.io/"
url "https://files.pythonhosted.org/packages/a7/a0/ebafb2982558837824fd7a63ea73c68d07d81f99d1c1c0f3a05161da417c/snakemake-5.1.5.tar.gz"
sha256 "9e5d8ab6cba6c1e7cb2c6f4118dc6052b07480c90c9a68781d8482d151ebec2f"
revision 1
url "https://files.pythonhosted.org/packages/98/d8/de041c00f7bc82dd27c3e70ea410324094bb688b7a1886231b8459be9665/snakemake-5.2.0.tar.gz"
sha256 "4123accb7853371d5f7f62f22c2fbafd1e8fd4b6c9d773edbfb5ae8ecb2e3128"
head "https://bitbucket.org/snakemake/snakemake.git"
bottle do
@ -46,11 +45,6 @@ class Snakemake < Formula
sha256 "7a11371cc2dbbad71d6dfef57ced6e8b384bb377eeb847c63d58f8dc8e8b2023"
end
resource "decorator" do
url "https://files.pythonhosted.org/packages/6f/24/15a229626c775aae5806312f6bf1e2a73785be3402c0acdec5dbddd8c11e/decorator-4.3.0.tar.gz"
sha256 "c39efa13fbdeb4506c476c9b3babf6a718da943dab7811c206005a4a956c080c"
end
resource "docutils" do
url "https://files.pythonhosted.org/packages/84/f4/5771e41fdf52aabebbadecc9381d11dea0fa34e4759b4071244fa094804c/docutils-0.14.tar.gz"
sha256 "51e64ef2ebfb29cae1faa133b3710143496eca21c530f3f71424d77687764274"
@ -61,26 +55,11 @@ class Snakemake < Formula
sha256 "684a38a6f903c1d71d6d5fac066b58d7768af4de2b832e426ec79c30daa94a16"
end
resource "Jinja2" do
url "https://files.pythonhosted.org/packages/56/e6/332789f295cf22308386cf5bbd1f4e00ed11484299c5d7383378cf48ba47/Jinja2-2.10.tar.gz"
sha256 "f84be1bb0040caca4cea721fcbbbbd61f9be9464ca236387158b0feea01914a4"
end
resource "jsonschema" do
url "https://files.pythonhosted.org/packages/58/b9/171dbb07e18c6346090a37f03c7e74410a1a56123f847efed59af260a298/jsonschema-2.6.0.tar.gz"
sha256 "6ff5f3180870836cae40f06fa10419f557208175f13ad7bc26caa77beb1f6e02"
end
resource "MarkupSafe" do
url "https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz"
sha256 "a6be69091dac236ea9c6bc7d012beab42010fa914c459791d627dad4910eb665"
end
resource "networkx" do
url "https://files.pythonhosted.org/packages/11/42/f951cc6838a4dff6ce57211c4d7f8444809ccbe2134179950301e5c4c83c/networkx-2.1.zip"
sha256 "64272ca418972b70a196cb15d9c85a5a6041f09a2f32e0d30c0255f25d458bb1"
end
resource "PyYAML" do
url "https://files.pythonhosted.org/packages/9e/a3/1d13970c3f36777c583f136c136f804d70f500168edc1edea6daa7200769/PyYAML-3.13.tar.gz"
sha256 "3ef3092145e9b70e3ddd2c7ad59bdd0252a94dfe3949721633e41344de00a6bf"
@ -107,8 +86,6 @@ class Snakemake < Formula
end
def install
inreplace "snakemake/shell.py", "async", "async_" # Python 3.7 compat
xy = Language::Python.major_minor_version "python3"
ENV.prepend_create_path "PYTHONPATH", buildpath/"cython/lib/python#{xy}/site-packages"