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abyss 2.1.4

Browse source 
See https://github.com/bcgsc/abyss/releases/tag/2.1.4

Closes #33972.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
This commit is contained in:
Shaun Jackman 2018-11-09 13:52:26 -08:00
parent 6739097ca1
commit 3f311fe931
1 changed files with 8 additions and 2 deletions
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10
Formula/abyss.rb
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@ -1,8 +1,8 @@
class Abyss < Formula
desc "Genome sequence assembler for short reads"
homepage "http://www.bcgsc.ca/platform/bioinfo/software/abyss"
url "https://github.com/bcgsc/abyss/releases/download/2.1.3/abyss-2.1.3.tar.gz"
sha256 "23a3e6562b2fa6f0e970d2c452ef98a799ac9892c86a7207f42c7a6ae6df09ab"
url "https://github.com/bcgsc/abyss/releases/download/2.1.4/abyss-2.1.4.tar.gz"
sha256 "2145a1727556104d6a14db06a9c06f47b96c31cc5ac595ae9c92224349bdbcfc"
bottle do
sha256 "610e245c999a566af5d3d552d8729bdb95e05792b381bbb0a0dbb459bbb3a6af" => :mojave
@ -31,6 +31,12 @@ class Abyss < Formula
end
def install
# Fix a compiler error. Remove with the next release of abyss.
# See https://github.com/bcgsc/abyss/commit/195f19bba03fec18d86cd931b34275222ba667fc
inreplace "lib/bloomfilter/BloomFilter.hpp",
'strncpy(header.magic, "BlOOMFXX", 8);',
'memcpy(header.magic, "BlOOMFXX", 8);'
system "./autogen.sh" if build.head?
system "./configure", "--enable-maxk=128",
"--prefix=#{prefix}",