From 572c470a149b7873e55f834a2566849d541123cf Mon Sep 17 00:00:00 2001
From: Mike McQuaid <mike@mikemcquaid.com>
Date: Fri, 14 Jul 2017 11:01:34 +0100
Subject: [PATCH] hdf5 1.10.1 (import from homebrew/science)

Closes #14417.

Signed-off-by: Mike McQuaid <mike@mikemcquaid.com>
---
 Formula/hdf5.rb     | 81 +++++++++++++++++++++++++++++++++++++++++++++
 tap_migrations.json |  1 -
 2 files changed, 81 insertions(+), 1 deletion(-)
 create mode 100644 Formula/hdf5.rb

diff --git a/Formula/hdf5.rb b/Formula/hdf5.rb
new file mode 100644
index 0000000000..1128788961
--- /dev/null
+++ b/Formula/hdf5.rb
@@ -0,0 +1,81 @@
+class Hdf5 < Formula
+  desc "File format designed to store large amounts of data"
+  homepage "https://www.hdfgroup.org/HDF5"
+  url "https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.bz2"
+  sha256 "9c5ce1e33d2463fb1a42dd04daacbc22104e57676e2204e3d66b1ef54b88ebf2"
+
+  bottle do
+    sha256 "cfcd0e27ff297c39b495285fc623a34b1751bdb4993beab94d86f52931bc3448" => :sierra
+    sha256 "a4e677a58a57aaaa4be1dd7fd165b15272ecbf265b7acfa7b89952aea3460467" => :el_capitan
+    sha256 "d9a15be0e5f7091084db292e32a469f9eaff7e3615b429c65f7fde2ef230a8f7" => :yosemite
+  end
+
+  deprecated_option "enable-fortran" => "with-fortran"
+  deprecated_option "enable-parallel" => "with-mpi"
+  deprecated_option "enable-cxx" => "with-cxx"
+
+  option :cxx11
+
+  depends_on "autoconf" => :build
+  depends_on "automake" => :build
+  depends_on "libtool" => :build
+  depends_on "szip"
+  depends_on :fortran => :optional
+  depends_on :mpi => [:optional, :cc, :cxx, :f90]
+
+  def install
+    ENV.cxx11 if build.cxx11?
+
+    inreplace %w[c++/src/h5c++.in fortran/src/h5fc.in tools/src/misc/h5cc.in],
+      "${libdir}/libhdf5.settings", "#{pkgshare}/libhdf5.settings"
+
+    inreplace "src/Makefile.am", "settingsdir=$(libdir)", "settingsdir=#{pkgshare}"
+
+    system "autoreconf", "-fiv"
+
+    args = %W[
+      --disable-dependency-tracking
+      --disable-silent-rules
+      --prefix=#{prefix}
+      --with-szlib=#{Formula["szip"].opt_prefix}
+      --enable-build-mode=production
+    ]
+
+    if build.with?("cxx") && build.without?("mpi")
+      args << "--enable-cxx"
+    else
+      args << "--disable-cxx"
+    end
+
+    if build.with? "fortran"
+      args << "--enable-fortran"
+    else
+      args << "--disable-fortran"
+    end
+
+    if build.with? "mpi"
+      ENV["CC"] = ENV["MPICC"]
+      ENV["CXX"] = ENV["MPICXX"]
+      ENV["FC"] = ENV["MPIFC"]
+
+      args << "--enable-parallel"
+    end
+
+    system "./configure", *args
+    system "make", "install"
+  end
+
+  test do
+    (testpath/"test.c").write <<-EOS.undent
+      #include <stdio.h>
+      #include "hdf5.h"
+      int main()
+      {
+        printf("%d.%d.%d\\n", H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE);
+        return 0;
+      }
+    EOS
+    system "#{bin}/h5cc", "test.c"
+    assert_equal version.to_s, shell_output("./a.out").chomp
+  end
+end
diff --git a/tap_migrations.json b/tap_migrations.json
index 7f2588fe37..45e7893ac1 100644
--- a/tap_migrations.json
+++ b/tap_migrations.json
@@ -26,7 +26,6 @@
   "gromacs": "homebrew/science",
   "gtkwave": "caskroom/cask",
   "hdf@4": "homebrew/science",
-  "hdf5": "homebrew/science",
   "helios": "spotify/public",
   "hexchat": "caskroom/cask",
   "horndis": "caskroom/cask",