wbrawner/homebrew-core
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

blast 2.10.0

Browse source
This commit is contained in:
Christiam Camacho 2019-11-27 10:43:17 -05:00 committed by Shaun Jackman
parent 7ce0154d71
commit 6d7e32ddce
1 changed files with 14 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

17
Formula/blast.rb
View file

@ -1,9 +1,9 @@
class Blast < Formula
desc "Basic Local Alignment Search Tool"
homepage "https://blast.ncbi.nlm.nih.gov/"
url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz"
version "2.9.0"
sha256 "a390cc2d7a09422759fc178db84de9def822cbe485916bbb2ec0d215dacdc257"
url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.10.0/ncbi-blast-2.10.0+-src.tar.gz"
version "2.10.0"
sha256 "3acdd9cec01c4f43e56aeaf89049cb8f8013d60b9c1705eced10166967f1d926"
bottle do
sha256 "9fef86c970bdc8556a479920bffd3d33a57c0ce7bdcad4c44f2469e116f940aa" => :catalina
@ -34,11 +34,22 @@ class Blast < Formula
end
test do
output = shell_output("#{bin}/update_blastdb.pl --showall")
assert_match "nt", output
(testpath/"test.fasta").write <<~EOS
>U00096.2:1-70
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
EOS
output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
assert_match "Identities = 70/70", output
# Create BLAST database
output = shell_output("#{bin}/makeblastdb -in test.fasta -out testdb -dbtype nucl")
assert_match "Adding sequences from FASTA", output
# Check newly created BLAST database
output = shell_output("#{bin}/blastdbcmd -info -db testdb")
assert_match "Database: test", output
end
end