fastqc: import from homebrew/science (#21735)

Formula/fastqc.rb

@@ -0,0 +1,26 @@
+class Fastqc < Formula
+  desc "Quality control tool for high throughput sequence data"
+  homepage "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
+  url "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip"
+  sha256 "dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66"
+
+  bottle :unneeded
+
+  depends_on :java
+
+  def install
+    libexec.install Dir["*"]
+    chmod 0755, libexec/"fastqc"
+    bin.install_symlink libexec/"fastqc"
+  end
+
+  test do
+    (testpath/"test.fasta").write <<~EOS
+      @SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
+      CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
+      +SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
+      #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+     EOS
+    assert_match "Analysis complete for test.fasta", shell_output("#{bin}/fastqc test.fasta")
+  end
+end