mafft 7.313

Closes #24169.

Signed-off-by: FX Coudert <fxcoudert@gmail.com>

Formula/mafft.rb

@@ -0,0 +1,28 @@
+class Mafft < Formula
+  desc "Multiple alignments with fast Fourier transforms"
+  homepage "https://mafft.cbrc.jp/alignment/software/"
+  url "https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-src.tgz"
+  sha256 "c48e5e05b427cae0d862daaef6148675d5ef57e24425c17b4c3d8da5b060eabd"
+
+  depends_on :macos => :lion
+
+  def install
+    make_args = %W[CC=#{ENV.cc} CXX=#{ENV.cxx} CFAGS=#{ENV.cflags}
+                   CXXFLAGS=#{ENV.cxxflags} PREFIX=#{prefix} MANDIR=#{man1}
+                   install]
+
+    cd "core" do
+      system "make", *make_args
+    end
+
+    cd "extensions" do
+      system "make", *make_args
+    end
+  end
+
+  test do
+    (testpath/"test.fa").write ">1\nA\n>2\nA"
+    output = shell_output("#{bin}/mafft test.fa")
+    assert_match ">1\na\n>2\na", output
+  end
+end