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augustus 3.3.1

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Closes #29323.

Signed-off-by: ilovezfs <ilovezfs@icloud.com>
This commit is contained in:
Susie Chen 2018-06-22 13:59:01 -07:00 committed by ilovezfs
parent 0217c54074
commit d0b6d47417
1 changed files with 5 additions and 3 deletions
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8
Formula/augustus.rb
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@ -1,9 +1,8 @@
class Augustus < Formula
desc "Predict genes in eukaryotic genomic sequences"
homepage "http://bioinf.uni-greifswald.de/augustus/"
url "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.tar.gz"
sha256 "b5eb811a4c33a2cc3bbd16355e19d530eeac6d1ac923e59f48d7a79f396234ee"
revision 1
url "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.1.tar.gz"
sha256 "e0249bff0345f6a790b5c56432f292040254457da22f1a2c212f42d7d2104087"
bottle do
sha256 "6ffeac4edd4805321ea0957959f85da8cc1f5978cdc8a98903a78c407d5d183e" => :high_sierra
@ -15,6 +14,9 @@ class Augustus < Formula
depends_on "boost"
def install
# Avoid "fatal error: 'sam.h' file not found" by not building bam2wig
inreplace "auxprogs/Makefile", "cd bam2wig; make;", "#cd bam2wig; make;"
# Fix error: api/BamReader.h: No such file or directory
inreplace "auxprogs/bam2hints/Makefile",
"INCLUDES = /usr/include/bamtools",