wbrawner/homebrew-core
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

augustus: cecompile auxprogs

Browse source 
Closes #24567.

Signed-off-by: FX Coudert <fxcoudert@gmail.com>
This commit is contained in:
Shaun Jackman 2018-02-26 11:48:50 -08:00 committed by FX Coudert
parent 01378fa63b
commit f4233376f3
1 changed files with 11 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

11
Formula/augustus.rb
View file

@ -3,6 +3,7 @@ class Augustus < Formula
homepage "http://bioinf.uni-greifswald.de/augustus/"
url "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.tar.gz"
sha256 "b5eb811a4c33a2cc3bbd16355e19d530eeac6d1ac923e59f48d7a79f396234ee"
revision 1
bottle do
cellar :any
@ -11,13 +12,23 @@ class Augustus < Formula
sha256 "57d0cdab04164c968240245b95159b21e464d7988dd4063d758dbfbb93e1b25a" => :el_capitan
end
depends_on "bamtools"
depends_on "boost"
def install
# Fix error: api/BamReader.h: No such file or directory
inreplace "auxprogs/bam2hints/Makefile",
"INCLUDES = /usr/include/bamtools",
"INCLUDES = #{Formula["bamtools"].include/"bamtools"}"
inreplace "auxprogs/filterBam/src/Makefile",
"BAMTOOLS = /usr/include/bamtools",
"BAMTOOLS= #{Formula["bamtools"].include/"bamtools"}"
# Prevent symlinking into /usr/local/bin/
inreplace "Makefile", %r{ln -sf.*/usr/local/bin/}, "#ln -sf"
# Compile executables for macOS. Tarball ships with executables for Linux.
system "make", "clean"
system "make"
system "make", "install", "INSTALLDIR=#{prefix}"