Commit graph

9811 commits

Author SHA1 Message Date
Jack Nagel
d4e69f81ce net6: fix audit warning
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 17:05:14 -05:00
Jack Nagel
dcce414935 gobby: fix audit warning
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 17:05:05 -05:00
nibbles 2bits
794cc013a4 getxbook 0.9
Upgrade getxbook to version 0.9.
Remove the patch for clang.  The issue is fixed in 0.9.
Tested with llvm and clang.

Closes Homebrew/homebrew#11929.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 16:57:46 -05:00
nibbles 2bits
da808a2ff9 c-ares 1.8.0
Upgrade c-ares to version 1.8.0.
Add `--disable-dependency-tracking` and `--disable-debug`

Closes Homebrew/homebrew#11930.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 16:55:14 -05:00
Jack Nagel
7984c5fb56 google-js-test: use a requirement for Snow Leopard
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 16:48:34 -05:00
Jack Nagel
af63923400 signing-party: fix typo
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 16:34:00 -05:00
Jack Nagel
6cc3fc2f65 cvs2svn: use a requirement for python with gdbm
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-28 16:33:55 -05:00
Silvio Henrique Ferreira
0212c4d943 treecc 0.3.10
Closes Homebrew/homebrew#10238.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 14:13:56 -07:00
John Paul Ashenfelter
7bd6769f70 storm 0.7.1
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 14:00:50 -07:00
Adam Vandenberg
c1adc36374 mlton: use a requirement to check install location 2012-04-28 11:59:28 -07:00
Adam Vandenberg
fd1e30b966 Boost: use requirement for universal python 2012-04-28 11:57:34 -07:00
Nibbles 2bits
5dc91132e1 avidemux 2.5.6
Avidemux is a popular video editor, actively developed since 2001.
Working with their lead engineer, the OSX code has been corrected,
and now the formula will build avidemux2_cli, the command line
version, with every video filter, encoder, and decoder available.

In addition, if the user has Qt installed, this will automatically
build the Qt gui, avidemux2.  Several weeks of work also gets us a
new CoreAudio output device for Qt, a feature missing since 2008.

Macports has a portfile for 2.5.3, a very buggy version.
The latest stable is 2.5.6. This formula will build stable or
2.5svn, which today is 2.5.6 r7750.

The 2.5 branch, called avidemux2, is being finalized.
The 2.6 branch, called avidemux3, is being very actively developed.

EDIT: removed patches merged upstream
EDIT: now compiles against r7668 on Lion.
EDIT: fixes indentation, removes some debug commands
EDIT: put two patches inline not on fileden
EDIT: remove patches merged upstream, inline variable 'a'
EDIT: add patch for ffmpeg compiling on 32bit OSX,
      switch url to 2.5.6 stable, add head (tested at r7724)
EDIT: remove dep on libvpx that fails with XCode-4.3.
EDIT: add back in the libvpx, it's fixed. Fix svn revision patch.
EDIT: Make svn rev patch apply only to head. Use cached_download
EDIT: Change head url to use http not svn.  Berlios svn offline.
EDIT: Install app to prefix not bin by Homebrew convention.
EDIT: Build verbose if brewed --with-debug.
EDIT: Fix optimization: O3 for regular, -g -O0 for clang debug,
      and -ggdb3 -O2 for llvm or gcc debug.
EDIT: shorten inreplaces, use buildpath, make test work w/head.
EDIT: remove cd, use mkdir do. use interpolated array style.
EDIT: Revert to allowing HB to use -Os.
EDIT: Add a patch for Jack's 32bit Snow Lep.

Closes Homebrew/homebrew#8429.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 11:42:13 -07:00
Adam Vandenberg
9ddbf906c0 CMake: use a requirement to look for expat.framework 2012-04-28 11:23:45 -07:00
Adam Vandenberg
c38c31ab89 MySQLreport: use stable download 2012-04-28 11:11:25 -07:00
Simon Head
2d4efedf06 xrootd 3.1.1
XRootD provides tools and ways to build high performance scalable
data repositories.

Closes Homebrew/homebrew#11879.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 11:08:17 -07:00
Daniel Passos
18e464feb9 pkg-config: update URLs
Closes Homebrew/homebrew#11919.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 11:00:05 -07:00
Dominik Moritz
066c02f8b0 open-scene-graph --devel 3.1.1
This fixes install and runtime issues on Lion.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 10:55:23 -07:00
Michael Hetrick
6e4cc97878 pure 0.53
Closes Homebrew/homebrew#11886.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 10:51:53 -07:00
Lars Bilke
7bbeebb578 metis 5.0.2
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 10:50:49 -07:00
Dane Springmeyer
b685a7b70f mapnik: limit concurrent make jobs
mapnik compiles can take ~1.5 GB per job for some .cpp files
so lets be cautious by limiting to CPUS/2

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 10:19:13 -07:00
Adam Vandenberg
aae6d65ff7 libpar2 fails with clang
See https://github.com/mxcl/homebrew/issues/11926
2012-04-28 10:16:57 -07:00
nibbles 2bits
dda1ec27bd automake 1.12
Upgrade automake to version 1.12.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 09:33:10 -07:00
Pascal Bertrand
604a50d27d go 1.0.1
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-28 09:32:43 -07:00
Sean Billig
88d9e772ae cassandra 1.1.0
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-27 23:01:08 -07:00
Ryan Schlesinger
865f4fbc5e mobile-shell 1.2 + HEAD
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-27 22:59:43 -07:00
Mike McQuaid
e9461695b7 Add patch to fix CMake pkg-config issue(s). 2012-04-28 14:13:22 +10:00
Kevin Moore
bfc16d87db dart v6943
Closes Homebrew/homebrew#11915.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-27 14:13:29 -05:00
nibbles 2bits
9fea4b5332 cpansearch 0.1.1
Upgrade cpansearch to version 0.1.1

Fixes Homebrew/homebrew#11909.
Closes Homebrew/homebrew#11911.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-27 14:11:46 -05:00
Birger J. Nordølum
12328c38a9 yasm: add head and optional python bindings
Added option for --HEAD and --enable-python.

Closes Homebrew/homebrew#11314.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-26 21:39:11 -05:00
Zach Moazeni
06035ab828 cabal-install 0.14.0
Closes Homebrew/homebrew#11875.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-26 21:08:50 -05:00
Shaun Jackman
1a61d1af31 ABySS 1.3.3
Closes Homebrew/homebrew#11884.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-25 22:07:43 -07:00
marqs
65d771fd37 rds-command-line-tools 1.6.001
Closes Homebrew/homebrew#11891.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-25 22:06:56 -07:00
Sorin Ionescu
e30a1d945a zsh: disable function subdirs
Closes Homebrew/homebrew#11880.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 22:19:41 -05:00
Anatol Pomozov
d24fec61ab Revert "fuse4x: update to 0.10.0"
0.10.0 contains a kernel panic. It is going to be fixed in 0.10.1.

This reverts commit 8a0932f320208db56c10d1d16fff31c22e3be87e.

Closes Homebrew/homebrew#11888.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-25 20:12:20 -07:00
Sean Reilly
50f1b79cf1 gradle 1.0-rc-2
Closes Homebrew/homebrew#11872.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 21:53:05 -05:00
Peter Aronoff
b8cbe9912d mu 0.9.8.3
- add caveat about rebuilding index

Closes Homebrew/homebrew#11877.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 21:53:02 -05:00
Sorin Ionescu
9181c3cdc7 zsh: Fix the prefix switch
Closes Homebrew/homebrew#11880.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 21:41:17 -05:00
Sevki
3950d7d0d6 emacs: use HTTP for git HEAD
Closes Homebrew/homebrew#11878.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 21:32:49 -05:00
nibbles 2bits
57b5926732 x264: update to r2197 and fix clang optimization
Upgrade x264 to the latest stable tarball, 20120425.
Add `ENV.O1` when compiling with clang, which fixes a segfault
when encoding with libx264.  The fps encoding rate remains the
same using this commit.  The changelog listed in the formula
comments was checked, and the version is unchanged.  This will
cause a hash fail when x264-r2184.tar.bz2 already exists.  The
user will have to remove the cached tarball and try again.  At
the time this commit is being submitted, the x264-devel mailing
listserv is offline.  So it hasn't been reported a second time.

Fixes Homebrew/homebrew#11248.
Closes Homebrew/homebrew#11885.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 21:26:06 -05:00
Birger J. Nordølum
12bff18950 OpenSSL: Fix regression in 1.0.1a for Mac OS 64-bit
Closes Homebrew/homebrew#11869.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-25 09:06:29 -07:00
Pepijn de Vos
73759efc47 pygtkglext 1.1.0
Closes Homebrew/homebrew#11801.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-25 07:21:09 -07:00
Jack Nagel
901c3cdd8e gdk-pixbuf 2.26.1
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 00:33:31 -05:00
nibbles 2bits
5ffec46aab autoconf 2.69
Upgrade autoconf to version 2.69 and adjust the patch only to deal
with the different line number.

Closes Homebrew/homebrew#11866.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-25 00:08:19 -05:00
Sorin Ionescu
3f3f3bd9e4 zsh: make the disabling of /etc optional
Closes Homebrew/homebrew#11056.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-24 23:52:34 -05:00
nibbles 2bits
f81742aa4f phoronix-test-suite 3.8.0
Upgrade phoronix-test-suite to version 3.8.0.
Change patch to support the changes within `install.sh`
* Put metafiles in prefix
* Add `.bash` to the bash-completion script name
* Change the XDG MIME Openbenchmarking conditional from `DESTDIR`
to `INSTALL_PREFIX` so that all the files it uses get copied into
the Cellar, because Macs don't run `xdg-utils`.  This makes that
conditional behave as if Phoronix is being installed into a chroot.
* Remove the `-e` from echo so that it doesn't get echoed.

Closes Homebrew/homebrew#11847.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-24 23:49:03 -05:00
nibbles 2bits
fa7ab387a4 typespeed: Fix hardcoded gcc
Typespeed-0.6.5 stopped development in 2008 but hard-codes `gcc`
into two of their Makefiles.  Use `ENV.cc` instead.  Tested on
Lion with clang and llvm-gcc.  Typespeed also does a `chgrp games`
Even though that group will likely not exist, the software still
works without error because the owner is correct, and the `chgrp`
does not stop the build if it is unsuccessful.

Closes Homebrew/homebrew#11848.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-24 23:44:55 -05:00
Birger J. Nordølum
148b1c2067 OpenSSL 1.0.1a
[jn: no-asm is to fix compilation on 64-bit; perhaps it is not needed on
32-bit, but I didn't test it and I don't think its that important.]

Closes Homebrew/homebrew#11821.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-24 23:41:47 -05:00
René Moser
cc9cf3c2c6 git-ftp 0.7.3
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 20:36:17 -07:00
Mark A. Matienzo
bb1f180268 bulk_extractor 1.2.1
add automake/autoconf dependencies if XCode >= 4.3

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 20:27:25 -07:00
Adam Vandenberg
abc16ddcc3 mediatomb: fails with clang 2012-04-24 09:10:16 -07:00
Miles Pomeroy
6505d49432 grc: find rc file in etc, not prefix/etc
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 07:34:50 -07:00
Filipe Moreira
fcdd371b1c mongodb: fix config file location in caveat
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 07:11:48 -07:00
Marnen Laibow-Koser
b6239976a8 gobby 0.4.94
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 07:05:54 -07:00
Adam Vandenberg
69370be3cb libinfinity 0.5.2 2012-04-24 07:05:53 -07:00
Marnen Laibow-Koser
6d2b5a940d obby 0.4.7
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 07:05:41 -07:00
Marnen Laibow-Koser
803843f3d8 net6 1.3.12
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 06:59:14 -07:00
Adam Vandenberg
da164bfcf5 gtksourceview: revert to 2.10.5
This version compiles against our version of glib.
2012-04-24 06:59:14 -07:00
Adam Vandenberg
a871d49dd8 glibmm 2.32.0 2012-04-24 06:59:14 -07:00
Erik Michaels-Ober
d95ecff6b8 Fix md5 for ruby-build v20120423
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-24 06:41:06 -07:00
Mike McQuaid
198728c50a Add and correctly find erlang bottle.
Fixes Homebrew/homebrew#11780.
2012-04-24 18:53:33 +10:00
Mike McQuaid
c756e7743b Revert "Add and correctly find erlang bottle."
This reverts commit 146e253856eb3e27b6b7382734fd178c160c1beb.
2012-04-24 18:10:09 +10:00
Mike McQuaid
35af315441 Add and correctly find erlang bottle. 2012-04-24 18:08:14 +10:00
Adam Vandenberg
530f9c7d5c Ace 6.1.1 2012-04-23 21:36:25 -07:00
Sorin Ionescu
689c50637e fontforge: fix carbon header paths, close Homebrew/homebrew#10572
Signed-off-by: Adam Vandenberg <flangy@gmail.com>

Find the developer prefix and use that, like MaPorts
- @adamv
2012-04-23 21:00:48 -07:00
Marcos Acosta
30720063f1 ruby-build v20120423
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-23 20:35:55 -07:00
Adam Vandenberg
455af13e32 szl: fails with clang
Fixes Homebrew/homebrew#11610
2012-04-23 20:28:28 -07:00
Patrick McLaughlin
02def32b00 yara 1.6
Closes Homebrew/homebrew#11830.

[jn: use -std=gnu89 instead of fails_with]

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-23 17:51:23 -05:00
James Aitken
b1a9adf12c Nginx: Stable 1.2.0
Closes Homebrew/homebrew#11837.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-23 17:41:13 -05:00
nibbles 2bits
4d069eb3bb clamav 0.97.4
Upgrade clamav to version 0.97.4.  If check is installed, this
will pass all its self tests using clang or llvm from XC-4.3.2.
Remove the --disable-debug, which is the default behavior.

Closes Homebrew/homebrew#11840.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-23 17:36:58 -05:00
nibbles 2bits
7abbd6896f parallel 20120422
Upgrade parallel to version 20120422.

Closes Homebrew/homebrew#11839.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-23 17:36:18 -05:00
nibbles 2bits
e81b11d7df help2man 1.40.9
Another upgrade for Help2Man, version 1.40.9

Closes Homebrew/homebrew#11838.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-23 17:35:53 -05:00
Misty De Meo
0f0d7ef8df exiftool 8.89 2012-04-23 10:18:16 -05:00
Misty De Meo
9684c9652d tmap: downgrade to 0.3.7
By user request - 0.3.7 is the version which is being officially
supported.

See Homebrew/homebrew#11813.
2012-04-23 10:17:11 -05:00
Misty De Meo
99c1bd3f4a emacs: don't build parallel for --HEAD
Fixes Homebrew/homebrew#11787, among others
2012-04-23 09:20:59 -05:00
Dave Cottlehuber
d4998f92a3 OpenSSL 1.0.1
Closes Homebrew/homebrew#11247.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 22:12:24 -05:00
Fernando Mut
d692c10848 New Formula: MesaLib-GLw
Installation of the GLw library compiled against the OS X version of
OpenGL libraries. Version 7.2 is considered by many (e.g. Fink, Ubuntu)
to be the stable version of MesaLib. GLw is not provided with OS X.
By default, MesaLib first compiles GL(mesa) and then GLw against it.
This forces that any application compiled against GLw will also need
to be linked with GL(mesa), not the native OS X version of OpenGL,
since otherwise you get a version incompatibility error.
In order to avoid having a duplicated version of the OpenGL library,
and also to take advantage of any hardware acceleration that the OS X
OpenGL version could provide, it is best to compile the GLw library
against the provided OS X OpenGL library. For this purpose, some
modifications to the autoconf setting file and the GLw Makefile
were performed. In particular, the inclusion of the OS X OpenGL header
files (located in /usr/X11/include/GL) instead of the header files
provided with the mesalib package, and the linkage against the OS X
OpenGL libraries (located in /usr/X11/lib). The compilation of the
GL(mesa) libraries was also removed from the autoconf settings file.
The installation of the package files is performed manually since the
'make install' fails due to a bad detection of symbolic links.

Closes Homebrew/homebrew#6074.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-22 17:59:58 -07:00
Rich Healey
a18fd15472 Python Google App Engine SDK 1.6.4
Closes Homebrew/homebrew#11799.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 19:15:54 -05:00
Rich Healey
c5f6ae11fe 64bit Go App Engine SDK 1.6.4
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 19:15:37 -05:00
Rich Healey
6ed9f553ab 32bit Go App Engine SDK 1.6.4
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 19:15:28 -05:00
Rich Healey
cd9fe02695 Java App Engine SDK 1.6.4
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 19:15:13 -05:00
Jack Nagel
ec4939e875 squashfs: fails with clang
cf. Homebrew/homebrew#8647.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:51:44 -05:00
Philipp Wollermann
091315f843 getmail 4.26.0
Closes Homebrew/homebrew#11815.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:49:19 -05:00
Jack Nagel
235026c3f0 scantailor: fails with clang
Fixes Homebrew/homebrew#11817.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:36:07 -05:00
Jack Nagel
2a49f3ced0 pango 1.30.0
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:14:02 -05:00
Camillo Lugaresi
2fdf5497f0 glib 2.32.1
Reviewed most patches (minus the UB stuff), fixed bugs, sent
patches upstream, updated to 2.32.1.

Closes Homebrew/homebrew#11279.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:10:17 -05:00
Jack Nagel
9f90cd8794 gettext: remove Snow Leopard bottle
The bottle was linked against libunistring, which is not a hard
dependency but gets picked up by the build if its present; this results
in breakage on systems where libunistring is not installed.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-22 18:00:05 -05:00
Trevor Wennblom
ea55558357 gconf 3.2.3
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-22 15:21:08 -07:00
Misty De Meo
228dcdc3f5 tmap fails_with :clang 2012-04-22 16:58:38 -05:00
Misty De Meo
2330ab8cee tmap 0.3.8 2012-04-22 16:58:10 -05:00
Misty De Meo
46aee21f20 ncmpcpp fails_with :clang
As reported by user patagonicus on IRC. Does build with LLVM.
2012-04-22 16:00:42 -05:00
Daniel Berjón
833476b0e9 libmusicbrainz 4.0.1
Closes Homebrew/homebrew#11812.

Signed-off-by: Misty De Meo <mistydemeo@gmail.com>
2012-04-22 14:33:45 -05:00
Sebastian Staudt
1c58fec715 gource: Update to 0.38
Gource now requires boost and glm.

Closes Homebrew/homebrew#11782.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-22 12:10:05 -07:00
Sebastian Staudt
05fdf4b078 New Formula: glm
Closes Homebrew/homebrew#11781.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-22 12:09:59 -07:00
Charlie Sharpsteen
7eb008bb68 boost: Fix Snow Leopard bottle
This bottle was built on 10.6.3 with XCode 3.2.6 and uses the system Python
instead of Homebrew's Python.
2012-04-22 12:05:18 -07:00
Mark A. Matienzo
bf54f7e912 New formula: srecord
Closes Homebrew/homebrew#11808.

Signed-off-by: Misty De Meo <mistydemeo@gmail.com>
2012-04-22 13:52:49 -05:00
Shaun Jackman
b0f9208097 ABySS 1.3.2
ABySS is a de novo sequence assembler that is designed for short reads
and large genomes.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-22 11:25:37 -07:00
BSS
77cab7892a gnu-time: patch to allow compilation with clang
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-22 11:17:40 -07:00
aas
49dd14ed61 Midnight Commander 4.8.3
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-22 11:15:32 -07:00
billchurch
a9ab0248f8 dnsmasq 2.60
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-22 11:10:17 -07:00
richo
63f776360f libogg, libvorbis: Add --HEAD
Closes Homebrew/homebrew#11146.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-22 10:52:40 -07:00
Maxwell Swadling
8a95ee125e usbmuxd: Add HEAD
Closes Homebrew/homebrew#11803.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-22 10:28:34 -07:00
Mike McQuaid
f6f14cb21b Remove Boost 10.6 bottle until fixed.
Fixes Homebrew/homebrew#11802.
Fixes Homebrew/homebrew#11633.
2012-04-22 21:40:50 +10:00
Ryan Senkbeil
3a447e0edb grib-api: Update to 1.9.16
Also flag as failing with Clang.

Closes Homebrew/homebrew#10942.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-21 19:05:40 -07:00
Frizlab
167d6bf558 gegl: Update to 0.2.0
Closes Homebrew/homebrew#11636.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-21 17:46:00 -07:00
Frizlab
d135cf4def babl: Update to 0.1.10
Closes Homebrew/homebrew#11635.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-21 17:39:02 -07:00
n0ts
04c02acc9d ppss 2.97
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-21 15:11:57 -07:00
Charlie Sharpsteen
bb325ef504 GRASS: Fix Lion builds
- Disable WxPython GUI. We have no stable WxMac build for this and building
    WxPython has the additional constraint of requiring a Framework build of
    Python.

  - Flag as failing with clang.

Fixes Homebrew/homebrew#8594.
2012-04-21 14:57:22 -07:00
Charlie Sharpsteen
61f6bcaecf GRASS: Don't install stuff outside of --prefix
Add a small patch to the GRASS makefile that removes a command that installs
stuff to `/Library/Documentation/Help`---this is outside of the prefix and we
don't have permissions for this directory.
2012-04-21 14:57:22 -07:00
Adam Vandenberg
81f9eeff87 Google-Sparsehash 1.12 2012-04-21 09:38:34 -07:00
Adam Vandenberg
8ca6c33d88 schroedinger 1.0.11 2012-04-21 08:54:45 -07:00
Andrew Marshall
c4d9e2dc6a Ruby 1.9.3-p194
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-20 23:47:07 -07:00
Jack Nagel
740222934d xmlto 0.0.25
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 22:48:45 -05:00
Toby DiPasquale
e9a94400c4 collectd: fails with clang
cf. Homebrew/homebrew#11651.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 22:30:43 -05:00
Jack Nagel
39c0fe6a25 collectd: fix permissions errors during configure
Fixes Homebrew/homebrew#11651.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 22:28:06 -05:00
Kevin Moore
2c62d54103 dart 6722
- add working test

Closes Homebrew/homebrew#11765.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 22:11:49 -05:00
Jack Nagel
30050e3ded libnet 1.1.6
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 22:02:41 -05:00
Greg Virgin
089072d68a avro-c 1.6.3
Closes Homebrew/homebrew#11786.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 21:40:40 -05:00
Rohan Singh
f402a8ce51 tcpflow 1.2.6
tcpflow has been moved to Github, and is now at 1.2.6.

Closes Homebrew/homebrew#11771.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 13:46:01 -05:00
Paul Welch
e69f9a01bf curl 7.25.0
Closes Homebrew/homebrew#11778.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 13:43:49 -05:00
nibbles 2bits
d58785809c getxbook: update to 0.8, fix clang compilation error
Remove the -Werror from its custom cflags fixes error with clang.
Reported upstream and noted in the formula comments.  Tested on Lion by
grabbing Game of Thrones preview from Amazon using cli and tcl gui.

Fixes Homebrew/homebrew#11760.
Closes Homebrew/homebrew#11768.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 13:37:21 -05:00
Gabe McArthur
b8b896789a guile devel 2.0.5
Closes Homebrew/homebrew#11767.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-20 13:34:30 -05:00
Dave Cottlehuber
aa052dff05 CouchDB: update to 1.2.0
- bump to latest release
- add --devel option for next anticipated release branch
- document how to run CouchDB as a system or user daemon

Closes Homebrew/homebrew#11440.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-20 10:32:36 -07:00
Nibbles 2bits
61013ef691 openimageio: Update to 1.0.3
Updates openimageio to version 1.0.3.
Fix compilation against glew.
Fix compilation against qt.
Fix building of iv.
Add all deps to maximize the filetypes oiio can open.
Add a dep on a new formula, field3d.
Add a dep on a new formula, opencolorio.
Build iv & the python bindings.
Run the official testsuite if the user options it.

This compiles without error using llvm-2335.9, clang-2.0.139,
and gcc-4.2.1.5666 from XCode-4.0.2 on 64bit Snow Leopard.
It compiles without error using llvm-2336.9 and clang-3.1.318
on Lion 10.7.3 using XCode-4.3.1.

As of 1.0.3 all tests pass make test.

EDIT: add an include for zlib.h on Lion.
EDIT: switches tarball to 0.10.4, compiles on Lion, same xfails
      in the testsuite (that only exists as a master on github).
EDIT: change the oiio-images url to a fixed commit tarball not
      the master trunk tarball.
EDIT: add def initialize to oiio-images subformula to trigger
      Homebrew's cache naming scheme, gets us oiioimages-1.0.0.tgz
EDIT: Change version to 0.10.5.  Remove patch for boost-mt naming
      because it works now.  Still needs zlib patch, been reported.
      Both previous test fails are fixed.  There is a new one.
EDIT: Inline the d variable.
EDIT: Remove HR, shorten option.
EDIT: Move inline patch to a DATA block.
EDIT: Change to version 0.10.6.
EDIT: Change to version 1.0.0.  Add devel block.
EDIT: Remove patch merged upstream.
EDIT: Fix python bindings to mimic vtk.rb.
EDIT: Add a dep on new formula OpenColorIO (ocio).
EDIT: Add a dep on webp.
EDIT: Remove illogical `which python-config` test.
EDIT: Add a fixed commit from branch RB-1.0 as the devel block url.
EDIT: Remove hard coded path to openjpeg.  Determine it instead.
EDIT: Upgrade to 1.0.2.  Shorten some comments.
EDIT: Remove code to find OpenJpeg.  It just works now.
EDIT: Add head url.  Remove Doxygen dep.  It already makes a pdf.
EDIT: Remove python option.  Just let it build that (10sec extra).
EDIT: Upgrade stable to 1.0.3, devel to 1.0.3a (bugfxes).
EDIT: Add back the oiio alias I clobbered.

Closes Homebrew/homebrew#8458.

Signed-off-by: Misty De Meo <mistydemeo@gmail.com>
2012-04-20 10:56:03 -05:00
Misty De Meo
b35b9464e2 wget: add HEAD 2012-04-20 10:44:19 -05:00
Misty De Meo
d04638af7c exiftool 8.88 2012-04-20 10:35:00 -05:00
Paul Welch
f27443a4f6 Jailkit 2.14
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-20 07:36:40 -07:00
Peter Neubauer
df2025c868 Neo4j 1.7
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-20 07:09:00 -07:00
Robert Jackson
9241769c66 rdesktop 1.7.1
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-20 07:06:45 -07:00
Mike McQuaid
dfbdda5060 Fix MySQL build with CMake 2.8.8.
Fixes Homebrew/homebrew#11754.
Fixes Homebrew/homebrew#11762.
2012-04-20 18:47:01 +10:00
Charlie Sharpsteen
f3d546c6a8 GDAL: Add FreeXL and LibDAP to --complete 2012-04-19 22:48:56 -07:00
Charlie Sharpsteen
869f17db82 Armadillo: Update to 3.0.2 2012-04-19 22:36:27 -07:00
Adam Vandenberg
16abc347cc Remove redundant :using specs 2012-04-19 21:06:00 -07:00
Bernhard Miklautz
015c866376 freerdp: fix building with clang
Closes Homebrew/homebrew#11385
Closes Homebrew/homebrew#11462

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-19 21:04:29 -07:00
Charlie Sharpsteen
444a2f7eef LibDAP: Use explicit path to system curl
Without this we get some really nasty arch flags in `dap-config` on Leopard and
Snow Leopard due to a fallback to buggy `libcurl.pc` files shipped with the
system.
2012-04-19 19:23:08 -07:00
Charlie Sharpsteen
762a255063 LibDAP: Update to 3.11.2 2012-04-19 17:00:13 -07:00
Charlie Sharpsteen
a74eb9e8c5 PostGIS: Simplify installation and add man pages
Instead of manually listing and installing every component in PostGIS, the
whole mess is now installed to a staging directory and copied to the prefix
using globbing operations.

Man pages are now installed as well.
2012-04-19 15:33:06 -07:00
nibbles 2bits
bbf2496210 opencolorio 1.0.7
Upgrade ocio to version 1.0.7.

Closes Homebrew/homebrew#11752.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-19 16:50:59 -05:00
Jocelyn Mallon
2629243ff0 pngcrush 1.7.27
Sstarting with v1.7.26, pngcrush uses zlib 1.2.6, and per project
changelog, requires -DZ_SOLO CFLAG to workaround compiler bugs:
http://pmt.sourceforge.net/pngcrush/changelog.html

Closes Homebrew/homebrew#11748.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-19 16:31:56 -05:00
Rich Healey
0521fe253b chicken: workaround for compilation with Clang/LLVM
Building with DEBUGBUILD is sufficient; be verbose about this so the
user is aware and has the chance to abort and possibly build with GCC if
it is available.

Closes Homebrew/homebrew#11696.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-19 16:22:34 -05:00
taiansu
cb21c09c07 v8: fix checksum
Closes Homebrew/homebrew#11757.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-19 16:10:59 -05:00
Shawn Jonnet
2a3a5ae472 redis 2.4.11
Closes Homebrew/homebrew#11758.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-19 16:09:37 -05:00
Charlie Sharpsteen
8ce6a9ae7e GDAL: Build and install man pages 2012-04-19 13:49:00 -07:00
Mike McQuaid
bb27ec11a2 CMake 2.8.8.
Fixes Homebrew/homebrew#11745.
2012-04-19 16:00:17 +10:00
Matt Robenolt
913f85fbd6 Swaks 20120320
Closes Homebrew/homebrew#11497.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 21:29:59 -07:00
Kyle Kauffman
dcf5e67d4d mathgl 1.11.2
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 21:02:47 -07:00
Adam Vandenberg
c3d383e059 smpeg: use make install 2012-04-18 20:40:13 -07:00
Adam Vandenberg
89e76365da v8 3.9.24 2012-04-18 19:52:39 -07:00
Adam Vandenberg
040c6128c6 dotwrp: use a stable 1.0 and add head 2012-04-18 19:41:14 -07:00
Adam Vandenberg
75dceb540f e2fsprogs: also install libs 2012-04-18 19:26:08 -07:00
Will Ross
27b587ee8b e2fsprogs: fix compilation under Lion w/ clang
Fix derived from Macports issue 91359:
https://trac.macports.org/changeset/91359

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 19:03:26 -07:00
Adam Vandenberg
ec07bdcf8c ruby: add gdbm dependency 2012-04-18 19:02:24 -07:00
Shawn Jonnet
821bb7701a Node devel 0.7.8
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 18:58:20 -07:00
Anthony Ramine
89d7f46ba0 rebar: install bash completion
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 18:57:30 -07:00
Charlie Sharpsteen
4b2159f126 OpenSSL: Clean up indentation 2012-04-18 10:00:17 -07:00
Dave Cottlehuber
e4edbc1a7b OpenSSL: enable 64-bit support
Build 64-bit by default where appropriate.

Closes Homebrew/homebrew#11701.

Signed-off-by: Charlie Sharpsteen <source@sharpsteen.net>
2012-04-18 09:44:35 -07:00
Will Ross
b22ae71d92 e2fsprogs 1.42.2
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:31:45 -07:00
Will Ross
7bac41ffbb e2fsprogs: add HEAD
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:31:14 -07:00
Thomas William
0afba0d053 Sofia-SIP 1.12.11
Sofia-SIP is an open-source SIP User-Agent library, compliant with the
IETF RFC3261 specification

Closes Homebrew/homebrew#11664.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:27:33 -07:00
Leonhardt Wille
0495a89e37 sispmctl v3.1
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:15:02 -07:00
Mark A. Matienzo
e14c46a6ad ghc: readd explicit version numbers
Fixes Homebrew/homebrew#11719.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:06:02 -07:00
David M. Lee
7185818e71 selenium-server-standalone 2.21.0
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-18 07:04:41 -07:00
nibbles 2bits
c2d1b93cc4 glfw 2.7.5, build shared library
Upgrade glfw to version 2.7.5.  Change the make target to
`cocoa-dist-install` so that it builds the shared library also.

Closes Homebrew/homebrew#11717.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-18 00:08:11 -05:00
nibbles 2bits
a6e66fcb01 plzip 0.9
Upgrade plzip to version 0.9.
Correct the configure flags.  It builds just like lzlib, lzip.
Add make check (~2sec) for data integrity. Is massively parallel.

Closes Homebrew/homebrew#11716.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-18 00:08:11 -05:00
Adam Vandenberg
3b418fb74b cfengine: don't use full path to make 2012-04-17 21:51:58 -07:00
Nick Silkey
1389e028f6 cfengine 3.3.0
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:48:22 -07:00
Nils Homer
17c84caac0 tmap 0.3.7
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:31:41 -07:00
brada
1d5bf4a7c0 adol-c: add trunk and colpack
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:27:59 -07:00
Stephan Hügel
8f321bf191 pcal 4.11.0
Pcal is used to create monthly-format paper calendars in PostScript format
These can be output directly to PDF. Example:

http://www.leancrew.com/all-this/2012/01/paper-calendars-with-pcal/

Closes Homebrew/homebrew#9374.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:14:06 -07:00
Adam Vandenberg
2b3500b04e cdo: fix deps 2012-04-17 21:05:51 -07:00
Chris Cosby
f2a7b63cdb wput 0.6.2
Closes Homebrew/homebrew#9859.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:03:38 -07:00
Casper Thomsen
95ff450eaa ettercap: Compiles with plugins
Adding --enable-plugins and skip_clean 'bin' since dyld will otherwise fail.

Closes Homebrew/homebrew#9667.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 21:00:48 -07:00
Max Horvath
4b797d56a9 nload 0.7.4
Closes Homebrew/homebrew#11390.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 22:59:16 -05:00
Luiz Irber
cfd5311492 CDO 1.5.4
Added new formula for CDO (Climate Data Operators). Based on Portfile available
at http://trac.macports.org/browser/trunk/dports/science/cdo/Portfile, but
without Proj support (CDO depends on a private header that Proj version
currently in Homebrew doesn't install).

Closes Homebrew/homebrew#11685.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 20:58:26 -07:00
skyisle
840a28f392 Android NDK r7c
Signed-off-by: skyisle <skyisle@gmail.com>

Closes Homebrew/homebrew#11715.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 22:36:14 -05:00
Michael Erb
0099c7a7b3 riak 1.1.2
Closes Homebrew/homebrew#11707.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 22:34:39 -05:00
Jack Nagel
d477221a73 uwsgi: don't strip symbols
Fixes Homebrew/homebrew#11705.
Probably fixes Homebrew/homebrew#11674.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 18:25:30 -05:00
Drew Hess
38c38cdc30 gambit-scheme: warn about build time with Clang/LLVM-GCC
Closes Homebrew/homebrew#11498.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 16:50:41 -05:00
Erik Kallen
ad60f9c1d9 dfu-util 0.5
Closes Homebrew/homebrew#11704.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
2012-04-17 16:22:16 -05:00
Charlie Sharpsteen
04d4ac373a GHC: Install 64bit version by default
The 64bit version of GHC became officially supported with the 7.0.2 release.
This is now used as the default unless the user does not have the required
hardware or invokes the `--32-bit` flag.

Closes Homebrew/homebrew#11490.
Closes Homebrew/homebrew#11491.
Closes Homebrew/homebrew#11708.
2012-04-17 12:08:58 -07:00
Charlie Sharpsteen
9b7288978c MuPDF: Add caveats and 10.6+ Requirement
The incompatibility with Leopard is now expressed as a requirement. Caveats
added explaining that the names of the command line tools have been altered to
prevent clashes with other packages.
2012-04-17 11:38:24 -07:00
nibbles 2bits
74f4d7a6df automake 1.11.5
Upgrade automake to version 1.11.5.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 06:59:32 -07:00
Damien Pollet
0b0304eb65 vimpager 1.6.8
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 06:59:16 -07:00
Stefan Schüßler
a89c491610 wmctrl 1.07
wmctrl is a UNIX/Linux command line tool to interact with an EWMH/NetWM
compatible X Window Manager.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-17 06:57:42 -07:00
Adam Vandenberg
0a0bd67dc5 GHC: use a Requirement 2012-04-17 06:50:31 -07:00
Charlie Sharpsteen
186861b63e GHC: Refuse to install on Leopard
The binary releases of the GHC compiler are no longer compatible with OS X
10.5.

Fixes Homebrew/homebrew#11671.
2012-04-17 06:44:31 -07:00
Stefan Schüßler
5b1302d6c4 gbdfed 1.6
gbdfed is a font editor for bitmap fonts: http://sofia.nmsu.edu/~mleisher/Software/gbdfed/

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 21:52:45 -07:00
Stephen Thirlwall
e889245368 fbida 2.09
Added a makefile patch to fbida-2.09

The patch has also been submitted upstream to the author.

Fixes Homebrew/homebrew#10801.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 21:29:54 -07:00
Adam Vandenberg
df74ddc471 Remove shen.
The Shen 3.1 source tarball has frequent in-place changes, which causes
the formula checksum to break.

Would accept this as a head-only formula in Homebrew-ALT, or if upstream
stops doing these sorts of non-versioned updates.
2012-04-16 21:06:55 -07:00
Adam Vandenberg
4992a36205 Remove SPIM.
Newer versions of SPIM are self-contained downloads
(and use Qt.)

Suggest that they be installed from the website:
http://spimsimulator.sourceforge.net/
2012-04-16 21:00:35 -07:00
Adam Vandenberg
7ed47337b4 uWSGI 1.1.2 2012-04-16 20:53:51 -07:00
Adam Vandenberg
f898f12e85 Remove libsgml
Formula download was removed.
Nothing in Homebrew depends on this (Io used to, but now vends
its own version.)

Closes Homebrew/homebrew#11244.
2012-04-16 20:47:11 -07:00
kuperman
de132ee928 tal 1.9
This is an older text processing tool that is useful for doing alignment
of trailing characters (e.g., block of /* */ comments).

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:45:07 -07:00
Anthony Ramine
12b7bd7976 libcaca 0.99.beta18
The formula now properly depends on imlib2 to enable support of other
formats than BMP.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:40:55 -07:00
Jannis Leidel
6c886dee26 GDAL: Reset ARCHFLAGS in case they've been set outside
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:36:12 -07:00
Jose Diaz-Gonzalez
90a79d8720 Grok 0.9.2
Closes Homebrew/homebrew#11409.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:27:45 -07:00
nibbles 2bits
0ea7fead50 libmikmod 3.2.0b3
* After seven years, libmikmod is back to active status.
* Change to the new Homepage.
* Upgrade to version 3.2.0b3 using the new tarball.
* Use the sha256 listed on the website.
* Remove all the autoreconf related commands and associated deps.
* Use the correct -Og or O2 for debug.
* Adjust the --with-debug option description to reflect that.
* Add the ENV.x11 rather than three configure flags for --with-x.
* Remove the --with-osx because it finds we are osx correctly.
* Remove the --with-debug=no, as it is the default.
* Keep the four inreplaces, as they are all still needed.
* All patches are merged upstream in HEAD.  Noted in formula.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:24:31 -07:00
Sundar Raman
b2a63d13ee git-encrypt 0.3.3
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:22:01 -07:00
Justin Hileman
5b2ae08509 Install mongod.conf if one isn't present.
Reduce the amount of mindless copy/paste required by one.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:10:51 -07:00
Angel Pizarro
ea14084398 GMAP/GSNAP 2012-04-10
GMAP/GSNAP is a widely used tool for alignment of high-throughput sequence data.
See details about GMAP/GSNAP here:
http://research-pub.gene.com/gmap

Here is the referencable peer-reviewed paper:

Thomas D. Wu and Colin K. Watanabe
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
Bioinformatics 2005 21:1859-1875

PUBMED ID 15728110 full citation at http://www.ncbi.nlm.nih.gov/pubmed/15728110

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 20:04:19 -07:00
Frank Celler
d316a8bc45 AvocadoDB 0.3.9
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2012-04-16 19:54:49 -07:00