class Bowtie2 < Formula desc "Fast and sensitive gapped read aligner" homepage "https://bowtie-bio.sourceforge.io/bowtie2/" url "https://github.com/BenLangmead/bowtie2/archive/v2.3.5.1.tar.gz" sha256 "86a018af1090900c160a0990cc106569805aa64a3ec8708e1d2127839e4a94b4" bottle do cellar :any sha256 "d7d7155e0021c3907424e52f556314129eb214fd703c88e3c164c511ec669a73" => :mojave sha256 "57ca0fb7b0c670fc2bf699abc7edb5912dc89d6b7dfb7f572beb163585580471" => :high_sierra sha256 "23ad887cdf7c6154399b708798f339731fdfb7ec514d8026a51c2ae8ce866a4c" => :sierra end depends_on "tbb" def install tbb = Formula["tbb"] system "make", "install", "WITH_TBB=1", "prefix=#{prefix}", "EXTRA_FLAGS=-L #{tbb.opt_lib}", "INC=-I #{tbb.opt_include}" pkgshare.install "example", "scripts" end test do system "#{bin}/bowtie2-build", "#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus" assert_predicate testpath/"lambda_virus.1.bt2", :exist?, "Failed to create viral alignment lambda_virus.1.bt2" end end