class Mafft < Formula desc "Multiple alignments with fast Fourier transforms" homepage "https://mafft.cbrc.jp/alignment/software/" url "https://mafft.cbrc.jp/alignment/software/mafft-7.429-with-extensions-src.tgz" sha256 "a939b153a5ebaa18a786ad0598ce11d177f4ccff698404a9f9686a38fc6ee67b" bottle do cellar :any_skip_relocation sha256 "8286d20021c84330602546f9bc7d12f3440b62cf4e41c53188ec4409608a759e" => :mojave sha256 "b7a38f20fb6fc2d10845b6605962cedc1f2dd952fd46bb420a13203b2873e632" => :high_sierra sha256 "39fe0fcdb27d0a2e358c3c9ea41d6f07bd169f228943bc37a1b3186f67833513" => :sierra end def install make_args = %W[CC=#{ENV.cc} CXX=#{ENV.cxx} PREFIX=#{prefix} install] system "make", "-C", "core", *make_args system "make", "-C", "extensions", *make_args end test do (testpath/"test.fa").write ">1\nA\n>2\nA" output = shell_output("#{bin}/mafft test.fa") assert_match ">1\na\n>2\na", output end end