54 lines
1.8 KiB
Ruby
54 lines
1.8 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast sequence search and clustering"
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homepage "https://mmseqs.com/"
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url "https://github.com/soedinglab/MMseqs2/archive/10-6d92c.tar.gz"
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version "10-6d92c"
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sha256 "62415e545706adc6e9e6689d34902f405ab5e5c67c8c7562bdd9dd4da2088697"
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bottle do
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cellar :any
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sha256 "96b2cf5f08089363df4cd8814b7528bac06c1dac8c11f4839c5dee453ce97122" => :catalina
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sha256 "813552b3664a81c0ec2e6ef973acc7d1cb5fdacdc02ddaff4787366ef81b7827" => :mojave
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sha256 "e229477bb366685e7725abb8a7ecfef9d74652266aa2761a7bfdc6b2bc20c39c" => :high_sierra
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sha256 "3fdb5ce1ace58238f4011df2f1f437fdc25031012b6a2e1a95c158a12b2acc3d" => :sierra
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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cxxstdlib_check :skip
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fails_with :clang # needs OpenMP support
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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:revision => "03da86a5c553d00c8d4484e9fbd8d68ef14e1169"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << "-DHAVE_SSE4_1=1"
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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unless Hardware::CPU.sse4?
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"MMseqs2 requires at least SSE4.1 CPU instruction support."
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end
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end
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test do
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system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
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system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
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system "#{bin}/mmseqs", "createtsv", "q", "q", "res", "res.tsv"
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assert_predicate testpath/"res.tsv", :exist?
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assert_predicate (testpath/"res.tsv").size, :positive?
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end
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end
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