55 lines
1.8 KiB
Ruby
55 lines
1.8 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast protein sequence search and clustering"
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homepage "https://mmseqs.org/"
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url "https://github.com/soedinglab/MMseqs2/archive/6-f5a1c.tar.gz"
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version "6-f5a1c"
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sha256 "41a7b3114a2f54796e0d4e423045ee1bc3372834f75c72956e5c9eda520db586"
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bottle do
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cellar :any
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sha256 "8db02bf960227746276cf0011fc40b9105b30ec05dcf2fb9a2507e5ca3419f83" => :mojave
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sha256 "08498f8a25d75e3d5b739cb880e4ad43e871485d8b510adb2840ffb27f0266b4" => :high_sierra
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sha256 "d0dccfee074cfee58e7e4f0995d10592ee130f68d59ae15ec507a0a853829db6" => :sierra
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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cxxstdlib_check :skip
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fails_with :clang # needs OpenMP support
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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:revision => "d3607c7913e67c7bb553a8dff0cc66eeb3387506"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << "-DHAVE_SSE4_1=1" if build.bottle?
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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unless Hardware::CPU.sse4?
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"MMseqs2 requires at least SSE4.1 CPU instruction support. The binary will not work correctly."
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end
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end
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test do
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system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
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system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
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assert_predicate testpath/"res", :exist?
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assert_predicate (testpath/"res").size, :positive?
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assert_predicate testpath/"res.index", :exist?
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assert_predicate (testpath/"res.index").size, :positive?
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end
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end
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