46 lines
1.9 KiB
Ruby
46 lines
1.9 KiB
Ruby
class Diamond < Formula
|
|
desc "Accelerated BLAST compatible local sequence aligner"
|
|
homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
|
|
url "https://github.com/bbuchfink/diamond/archive/v0.9.26.tar.gz"
|
|
sha256 "09f9ef48ffe25ae5627ba4511e94be3a2573cfc45b0d813b9698916ff7db7f9b"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "2c1043d6777836eda97c5d518c42d316f5d1bef227797fc0fbc986f6068aafb0" => :catalina
|
|
sha256 "31acce0071e0292153db1abf1b8eb90c36c52ec5ed09cf9243d368697838cf8e" => :mojave
|
|
sha256 "fb8c954ff0d94e79529a067931bec2e86d222010655fe03ad6e32dc6a4a0f1ed" => :high_sierra
|
|
end
|
|
|
|
depends_on "cmake" => :build
|
|
uses_from_macos "zlib"
|
|
|
|
def install
|
|
system "cmake", ".", *std_cmake_args
|
|
system "make", "install"
|
|
end
|
|
|
|
test do
|
|
(testpath/"nr.faa").write <<~EOS
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
|
|
grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
|
|
XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
|
|
agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
|
|
eagewrepgrrslqXaeiaplhsslgdrarlrlkk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
|
|
pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
|
|
rqengvnpgggacseprsrhctpawaterdsvskk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
|
|
fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
|
|
gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
|
|
ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
|
|
gftvlarmvsisXprdppasasqsagitgvshrar
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
|
|
ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
|
|
vspcXpgwsrspdlvirpprppkvlglqaXatapg
|
|
EOS
|
|
output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr 2>&1")
|
|
assert_match "Processed 6 sequences, 572 letters.", output
|
|
end
|
|
end
|