40 lines
1.4 KiB
Ruby
40 lines
1.4 KiB
Ruby
class Beast < Formula
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desc "Bayesian Evolutionary Analysis Sampling Trees"
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homepage "http://beast.community/"
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url "https://github.com/beast-dev/beast-mcmc/archive/v1.10.0.tar.gz"
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sha256 "5c77d0dab496489d1418d562a4ef90710f9ff70628a35e6089269605788953df"
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head "https://github.com/beast-dev/beast-mcmc.git"
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bottle do
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cellar :any_skip_relocation
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sha256 "d2ac18914ff4796b0ebf2d8dd957d3ae7cab960ce54b7708f97555199fbb135d" => :high_sierra
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sha256 "5415f2f49a9bb8ff4b5b8078b1df6dcfc76043e3d9fd29d0ed4baaf7349a4418" => :sierra
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sha256 "e27eb22cbfde02b27d6354b1c6a532be88ac5ac2168353d59ae15fae477ba71e" => :el_capitan
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end
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depends_on "ant" => :build
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depends_on "beagle"
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depends_on :java => "1.7+"
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def install
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system "ant", "linux"
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libexec.install Dir["release/Linux/BEASTv*/*"]
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pkgshare.install_symlink libexec/"examples"
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bin.install_symlink Dir[libexec/"bin/*"]
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end
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test do
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cp pkgshare/"examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml", testpath
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# Run fewer generations to speed up tests
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inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
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'chainLength="100000"'
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system "#{bin}/beast", "testUCRelaxedClockLogNormal.xml"
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%w[ops log trees].each do |ext|
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output = "testUCRelaxedClockLogNormal." + ext
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assert_predicate testpath/output, :exist?, "Failed to create #{output}"
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end
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end
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end
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