26 lines
842 B
Ruby
26 lines
842 B
Ruby
class Fastqc < Formula
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desc "Quality control tool for high throughput sequence data"
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homepage "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
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url "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip"
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sha256 "ca87fe77807e4ac796b6cad949858921fd20652c4038f586f05ece94b5022129"
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bottle :unneeded
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depends_on :java
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def install
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libexec.install Dir["*"]
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chmod 0755, libexec/"fastqc"
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bin.install_symlink libexec/"fastqc"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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@SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
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CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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+SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
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#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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EOS
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assert_match "Analysis complete for test.fasta", shell_output("#{bin}/fastqc test.fasta")
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end
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end
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