30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "http://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2"
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sha256 "e7b09673176aa32937abd80f95f432809e722f141b5342186dfef6a53df64ca1"
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bottle do
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cellar :any
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sha256 "368dbaf769be26a7c383ee6ab33b9368d70d15b144701489fa33a3475ca5301e" => :high_sierra
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sha256 "9be1d5c1a480482885a880c3004906d51b7cb1a89dac25c239513a8b04acfbba" => :sierra
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sha256 "931f8245341783d7d96789c8cc5b3eea6c8071d1ce82644486884cece294e54e" => :el_capitan
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end
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depends_on "htslib"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"samtools", "faidx", "test.fasta"
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assert_equal "U00096.2:1-70\t70\t15\t70\t71\n", (testpath/"test.fasta.fai").read
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end
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end
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