homebrew-core/Formula/blast.rb
Jonathan Chang 5087b2a214
blast: revert 2.10.0 ()
* Revert "blast: update 2.10.0 bottle."

This reverts commit a3bb84762b.

* Revert "blast 2.10.0"

This reverts commit 91ba787ba7.
2019-11-14 10:52:59 +11:00

44 lines
1.6 KiB
Ruby

class Blast < Formula
desc "Basic Local Alignment Search Tool"
homepage "https://blast.ncbi.nlm.nih.gov/"
url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz"
version "2.9.0"
sha256 "a390cc2d7a09422759fc178db84de9def822cbe485916bbb2ec0d215dacdc257"
bottle do
sha256 "9fef86c970bdc8556a479920bffd3d33a57c0ce7bdcad4c44f2469e116f940aa" => :catalina
sha256 "e07f0dafa79bd72359cf467ba8cf8e51d76665c1571128dc7cc5d7857c5b92d8" => :mojave
sha256 "3de6646d96d9fdbf6b76fdf57a14612c8eebbfa1327f0d42e0402b516b6298ec" => :high_sierra
sha256 "57f2e2f9c65aa5364eb72a9bbdf6948a30af2975a53445a4b43203f56395da7c" => :sierra
end
depends_on "lmdb"
conflicts_with "proj", :because => "both install a `libproj.a` library"
def install
cd "c++" do
# Use ./configure --without-boost to fix
# error: allocating an object of abstract class type 'ncbi::CNcbiBoostLogger'
# Boost is used only for unit tests.
# See https://github.com/Homebrew/homebrew-science/pull/3537#issuecomment-220136266
system "./configure", "--prefix=#{prefix}",
"--without-debug",
"--without-boost"
# Fix the error: install: ReleaseMT/lib/*.*: No such file or directory
system "make"
system "make", "install"
end
end
test do
(testpath/"test.fasta").write <<~EOS
>U00096.2:1-70
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
EOS
output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
assert_match "Identities = 70/70", output
end
end