50 lines
1.8 KiB
Ruby
50 lines
1.8 KiB
Ruby
class Beast < Formula
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desc "Bayesian Evolutionary Analysis Sampling Trees"
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homepage "http://beast.community/"
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head "https://github.com/beast-dev/beast-mcmc.git"
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stable do
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url "https://github.com/beast-dev/beast-mcmc/archive/v1.10.1.tar.gz"
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sha256 "bceed133e21fcde567a6c32e3fc4a07ef77791c5b48fb01769bb2a6431edcb5f"
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# Fix build system on 1.10.1. Remove after next release
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patch do
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url "https://github.com/beast-dev/beast-mcmc/commit/0b6ab7d5771648051e430579c4baa51aea497c65.patch?full_index=1"
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sha256 "0db99329d47062d0e507c5387d5dacbb44c83273ec2e5e30ee18bc7adba2c9de"
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end
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end
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bottle do
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cellar :any_skip_relocation
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sha256 "eceff45849a4b799c9f0d590b2746c1b2764e09a0abec1fdd7c803a9b16bd59c" => :mojave
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sha256 "18363f90761d465aa9b3e1a2e37b884fcc2361fbb927cb5d91184eb92fc3c0d7" => :high_sierra
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sha256 "3440a01630e7673369720258960618b4c0f0f8305775151b62e8b50818208675" => :sierra
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sha256 "b11b1291e5a960aaf77bef07542f9e7a9b0da2e8fb24a24da3fa8c12a07381ee" => :el_capitan
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end
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depends_on "ant" => :build
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depends_on "beagle"
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depends_on :java => "1.7+"
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def install
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system "ant", "linux"
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libexec.install Dir["release/Linux/BEASTv*/*"]
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pkgshare.install_symlink libexec/"examples"
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bin.install_symlink Dir[libexec/"bin/*"]
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end
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test do
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cp pkgshare/"examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml", testpath
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# Run fewer generations to speed up tests
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inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
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'chainLength="100000"'
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system "#{bin}/beast", "testUCRelaxedClockLogNormal.xml"
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%w[ops log trees].each do |ext|
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output = "testUCRelaxedClockLogNormal." + ext
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assert_predicate testpath/output, :exist?, "Failed to create #{output}"
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end
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end
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end
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