45 lines
1.8 KiB
Ruby
45 lines
1.8 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.24.tar.gz"
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sha256 "22e8fc3980c2f5d6b584d4fefa3406172141697f7cb32b9742cb43a593b4ff24"
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bottle do
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cellar :any_skip_relocation
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sha256 "d142fdeb7bcaf6fe11a63bea7027d7e71a16165243ec1a4e1bc319941ffea21f" => :mojave
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sha256 "2ea545335e21704468d960aae7b9d5702e7a0bcb7540cc7ca6bb872ecce4bb50" => :high_sierra
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sha256 "a7eb2dad7dece443eeb54b53084bc7c715f221067dce51d7e238214dc402b2d2" => :sierra
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end
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depends_on "cmake" => :build
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr 2>&1")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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