56 lines
1.8 KiB
Ruby
56 lines
1.8 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast protein sequence search and clustering"
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homepage "https://mmseqs.org/"
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url "https://github.com/soedinglab/MMseqs2/archive/2-23394.tar.gz"
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version "2-23394"
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sha256 "36763fff4c4de1ab6cfc37508a2ee9bd2f4b840e0c9415bd1214280f67b67072"
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revision 1
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bottle do
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cellar :any
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sha256 "6e492564e40f85bf54383aa6013c9683646b235d68491b17af6d3ac34f1e5c32" => :high_sierra
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sha256 "36c412cf77cad2bc556cb523e1c1b0a1bc32ce96197e196997d0f8b5c9c64d9a" => :sierra
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sha256 "f83839b18c21e254800a830be8774c3f20d2c570d930d4b4cc6b9ec56eadcc7d" => :el_capitan
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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cxxstdlib_check :skip
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fails_with :clang # needs OpenMP support
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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:revision => "fda4cf3f63e4c5b01be9d6b66f6666e81cc8ca99"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << "-DHAVE_SSE4_1=1" if build.bottle?
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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unless Hardware::CPU.sse4?
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"MMseqs2 requires at least SSE4.1 CPU instruction support. The binary will not work correctly."
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end
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end
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test do
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system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
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system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
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assert_predicate testpath/"res", :exist?
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assert_predicate (testpath/"res").size, :positive?
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assert_predicate testpath/"res.index", :exist?
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assert_predicate (testpath/"res.index").size, :positive?
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end
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end
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