29 lines
1 KiB
Ruby
29 lines
1 KiB
Ruby
class Sickle < Formula
|
|
desc "Windowed adaptive trimming for FASTQ files using quality"
|
|
homepage "https://github.com/najoshi/sickle"
|
|
url "https://github.com/najoshi/sickle/archive/v1.33.tar.gz"
|
|
sha256 "eab271d25dc799e2ce67c25626128f8f8ed65e3cd68e799479bba20964624734"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "3aeaaa4393148876cc55cc9defbe82ae0fe0dabea18e418413b2aa8cff23dd0b" => :high_sierra
|
|
sha256 "844b063d1496d2a7c7f8a12b2239ae32766a538557d44f712c584a30b9775fae" => :sierra
|
|
sha256 "138b38a20aefc55ec4005ee4c4622ec332cbb13ff4ebc39ff45d91a2c12afde8" => :el_capitan
|
|
end
|
|
|
|
def install
|
|
system "make"
|
|
bin.install "sickle"
|
|
end
|
|
|
|
test do
|
|
(testpath/"test.fastq").write <<~EOS
|
|
@U00096.2:1-70
|
|
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
|
|
+
|
|
IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII0000000000
|
|
EOS
|
|
cmd = "#{bin}/sickle se -f test.fastq -t sanger -o /dev/stdout"
|
|
assert_equal "GTGTC\n", shell_output(cmd).lines[1][-6..-1]
|
|
end
|
|
end
|