65 lines
1.7 KiB
Ruby
65 lines
1.7 KiB
Ruby
class Cromwell < Formula
|
|
desc "Workflow Execution Engine using Workflow Description Language"
|
|
homepage "https://github.com/broadinstitute/cromwell"
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/34/cromwell-34.jar"
|
|
sha256 "d99749268eda20a8a236b6196905e6471a724bc5172c26a88bf4717ba40e0a4f"
|
|
|
|
head do
|
|
url "https://github.com/broadinstitute/cromwell.git"
|
|
depends_on "sbt" => :build
|
|
end
|
|
|
|
bottle :unneeded
|
|
|
|
depends_on "akka"
|
|
depends_on :java => "1.8+"
|
|
|
|
resource "womtool" do
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/34/womtool-34.jar"
|
|
sha256 "d40b6ff942bd90425c5f79eee170ec2c52e8b011dfe4c9a323da5a6677102f5a"
|
|
end
|
|
|
|
def install
|
|
if build.head?
|
|
system "sbt", "assembly"
|
|
libexec.install Dir["target/scala-*/cromwell-*.jar"][0]
|
|
libexec.install Dir["womtool/target/scala-2.12/womtool-*.jar"][0]
|
|
else
|
|
libexec.install Dir["cromwell-*.jar"][0]
|
|
resource("womtool").stage do
|
|
libexec.install Dir["womtool-*.jar"][0]
|
|
end
|
|
end
|
|
bin.write_jar_script Dir[libexec/"cromwell-*.jar"][0], "cromwell", "$JAVA_OPTS"
|
|
bin.write_jar_script Dir[libexec/"womtool-*.jar"][0], "womtool"
|
|
end
|
|
|
|
test do
|
|
(testpath/"hello.wdl").write <<~EOS
|
|
task hello {
|
|
String name
|
|
|
|
command {
|
|
echo 'hello ${name}!'
|
|
}
|
|
output {
|
|
File response = stdout()
|
|
}
|
|
}
|
|
|
|
workflow test {
|
|
call hello
|
|
}
|
|
EOS
|
|
|
|
(testpath/"hello.json").write <<~EOS
|
|
{
|
|
"test.hello.name": "world"
|
|
}
|
|
EOS
|
|
|
|
result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
|
|
|
|
assert_match "test.hello.response", result
|
|
end
|
|
end
|