43 lines
1.5 KiB
Ruby
43 lines
1.5 KiB
Ruby
class Blast < Formula
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desc "Basic Local Alignment Search Tool"
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homepage "https://blast.ncbi.nlm.nih.gov/"
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url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.8.1/ncbi-blast-2.8.1+-src.tar.gz"
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version "2.8.1"
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sha256 "e03dd1a30e37cb8a859d3788a452c5d70ee1f9102d1ee0f93b2fbd145925118f"
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bottle do
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sha256 "878c83917ebf683d6555669bdab9052eefc13c1bc7b954a3306db0a34709e862" => :mojave
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sha256 "c16d8d858839b6fcfb8c024b3d001a3cd6deb4b1dfee3d37a4f37aabdc525651" => :high_sierra
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sha256 "0d67fc57e7ac3fb1d208166b2795f6553c8279c57b67ce6b399e398c657a887d" => :sierra
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end
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depends_on "lmdb"
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conflicts_with "proj", :because => "both install a `libproj.a` library"
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def install
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cd "c++" do
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# Use ./configure --without-boost to fix
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# error: allocating an object of abstract class type 'ncbi::CNcbiBoostLogger'
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# Boost is used only for unit tests.
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# See https://github.com/Homebrew/homebrew-science/pull/3537#issuecomment-220136266
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system "./configure", "--prefix=#{prefix}",
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"--without-debug",
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"--without-boost"
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# Fix the error: install: ReleaseMT/lib/*.*: No such file or directory
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system "make"
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system "make", "install"
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end
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
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assert_match "Identities = 70/70", output
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end
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end
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