30 lines
1 KiB
Ruby
30 lines
1 KiB
Ruby
class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.8/htslib-1.8.tar.bz2"
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sha256 "c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1"
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bottle do
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cellar :any
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sha256 "9bbd0f83d2f5e7ea2d9889bfabb6f47aba7ea5d9dfb9070f0566bd7bba9e4f32" => :high_sierra
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sha256 "5ec146ac61a5e7cff8c8f71f3a4ddf64871d4dd3dcfd043e4b5630292abe39fa" => :sierra
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sha256 "b122c09b37bf213d9eca36ae852011af1c56210d755dc44103ca11882b4a9b7d" => :el_capitan
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end
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depends_on "xz"
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def install
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system "./configure", "--prefix=#{prefix}"
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system "make", "install"
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pkgshare.install "test"
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end
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test do
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sam = pkgshare/"test/ce#1.sam"
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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