homebrew-core/Formula/snakemake.rb

class Snakemake < Formula
  include Language::Python::Virtualenv

  desc "Pythonic workflow system"
  homepage "https://snakemake.readthedocs.io/"
  url "https://files.pythonhosted.org/packages/b9/a6/e75672e6b0fb5fc8b2c29fe46c45d6e957da578a88241be2ec02e2edcf8a/snakemake-5.6.0.tar.gz"
  sha256 "65b944bcf06fd31b5da7430a6012a542c4c3c05a822b92ca218f2406eabd2c24"
  head "https://bitbucket.org/snakemake/snakemake.git"

  bottle do
    cellar :any_skip_relocation
    sha256 "a25f79eebd710e002c87c0210007be38d876c06887c8bb3a1a93dc8d17f2e0fd" => :catalina
    sha256 "48fe4c7e2990ecabeb0445b472f2022b45f9082296b982512713dc06cc07bf50" => :mojave
    sha256 "3300097ba5a82959996cbd6e10f3cdc035752f4ec147b82b6681d6a421e89789" => :high_sierra
    sha256 "7d24791d40db5d91701c5e599bc2d3d003698797ecf17dbcefa17f5585603c06" => :sierra
  end

  depends_on "python"

  resource "appdirs" do
    url "https://files.pythonhosted.org/packages/48/69/d87c60746b393309ca30761f8e2b49473d43450b150cb08f3c6df5c11be5/appdirs-1.4.3.tar.gz"
    sha256 "9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92"
  end

  resource "attrs" do
    url "https://files.pythonhosted.org/packages/cc/d9/931a24cc5394f19383fbbe3e1147a0291276afa43a0dc3ed0d6cd9fda813/attrs-19.1.0.tar.gz"
    sha256 "f0b870f674851ecbfbbbd364d6b5cbdff9dcedbc7f3f5e18a6891057f21fe399"
  end

  resource "certifi" do
    url "https://files.pythonhosted.org/packages/62/85/7585750fd65599e88df0fed59c74f5075d4ea2fe611deceb95dd1c2fb25b/certifi-2019.9.11.tar.gz"
    sha256 "e4f3620cfea4f83eedc95b24abd9cd56f3c4b146dd0177e83a21b4eb49e21e50"
  end

  resource "chardet" do
    url "https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz"
    sha256 "84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae"
  end

  resource "ConfigArgParse" do
    url "https://files.pythonhosted.org/packages/55/ea/f0ade52790bcd687127a302b26c1663bf2e0f23210d5281dbfcd1dfcda28/ConfigArgParse-0.14.0.tar.gz"
    sha256 "2e2efe2be3f90577aca9415e32cb629aa2ecd92078adbe27b53a03e53ff12e91"
  end

  resource "datrie" do
    url "https://files.pythonhosted.org/packages/f5/a2/49d6db3af61eb139fb8fa2cdff90a4789e8255d227baf8f9a1ec945b4aac/datrie-0.8.tar.gz"
    sha256 "bdd5da6ba6a97e7cd96eef2e7441c8d2ef890d04ba42694a41c7dffa3aca680c"
  end

  resource "docutils" do
    url "https://files.pythonhosted.org/packages/93/22/953e071b589b0b1fee420ab06a0d15e5aa0c7470eb9966d60393ce58ad61/docutils-0.15.2.tar.gz"
    sha256 "a2aeea129088da402665e92e0b25b04b073c04b2dce4ab65caaa38b7ce2e1a99"
  end

  resource "gitdb2" do
    url "https://files.pythonhosted.org/packages/c4/5c/579abccd59187eaf6b3c8a4a6ecd86fce1dfd818155bfe4c52ac28dca6b7/gitdb2-2.0.5.tar.gz"
    sha256 "83361131a1836661a155172932a13c08bda2db3674e4caa32368aa6eb02f38c2"
  end

  resource "GitPython" do
    url "https://files.pythonhosted.org/packages/51/46/993beca52f3b609d148071e129235b866626eeb6056f2faffb41d9d727a7/GitPython-3.0.2.tar.gz"
    sha256 "d2f4945f8260f6981d724f5957bc076398ada55cb5d25aaee10108bcdc894100"
  end

  resource "idna" do
    url "https://files.pythonhosted.org/packages/ad/13/eb56951b6f7950cadb579ca166e448ba77f9d24efc03edd7e55fa57d04b7/idna-2.8.tar.gz"
    sha256 "c357b3f628cf53ae2c4c05627ecc484553142ca23264e593d327bcde5e9c3407"
  end

  resource "jsonschema" do
    url "https://files.pythonhosted.org/packages/92/d2/8768983d6e4bb1478ea08e7bc186304f47b99c22bfd711caa8e9becb0361/jsonschema-3.0.2.tar.gz"
    sha256 "8d4a2b7b6c2237e0199c8ea1a6d3e05bf118e289ae2b9d7ba444182a2959560d"
  end

  resource "pyrsistent" do
    url "https://files.pythonhosted.org/packages/b9/66/b2638d96a2d128b168d0dba60fdc77b7800a9b4a5340cefcc5fc4eae6295/pyrsistent-0.15.4.tar.gz"
    sha256 "34b47fa169d6006b32e99d4b3c4031f155e6e68ebcc107d6454852e8e0ee6533"
  end

  resource "PyYAML" do
    url "https://files.pythonhosted.org/packages/e3/e8/b3212641ee2718d556df0f23f78de8303f068fe29cdaa7a91018849582fe/PyYAML-5.1.2.tar.gz"
    sha256 "01adf0b6c6f61bd11af6e10ca52b7d4057dd0be0343eb9283c878cf3af56aee4"
  end

  resource "ratelimiter" do
    url "https://files.pythonhosted.org/packages/5b/e0/b36010bddcf91444ff51179c076e4a09c513674a56758d7cfea4f6520e29/ratelimiter-1.2.0.post0.tar.gz"
    sha256 "5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7"
  end

  resource "requests" do
    url "https://files.pythonhosted.org/packages/01/62/ddcf76d1d19885e8579acb1b1df26a852b03472c0e46d2b959a714c90608/requests-2.22.0.tar.gz"
    sha256 "11e007a8a2aa0323f5a921e9e6a2d7e4e67d9877e85773fba9ba6419025cbeb4"
  end

  resource "six" do
    url "https://files.pythonhosted.org/packages/dd/bf/4138e7bfb757de47d1f4b6994648ec67a51efe58fa907c1e11e350cddfca/six-1.12.0.tar.gz"
    sha256 "d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
  end

  resource "smmap2" do
    url "https://files.pythonhosted.org/packages/3b/ba/e49102b3e8ffff644edded25394b2d22ebe3e645f3f6a8139129c4842ffe/smmap2-2.0.5.tar.gz"
    sha256 "29a9ffa0497e7f2be94ca0ed1ca1aa3cd4cf25a1f6b4f5f87f74b46ed91d609a"
  end

  resource "urllib3" do
    url "https://files.pythonhosted.org/packages/4c/13/2386233f7ee40aa8444b47f7463338f3cbdf00c316627558784e3f542f07/urllib3-1.25.3.tar.gz"
    sha256 "dbe59173209418ae49d485b87d1681aefa36252ee85884c31346debd19463232"
  end

  resource "wrapt" do
    url "https://files.pythonhosted.org/packages/23/84/323c2415280bc4fc880ac5050dddfb3c8062c2552b34c2e512eb4aa68f79/wrapt-1.11.2.tar.gz"
    sha256 "565a021fd19419476b9362b05eeaa094178de64f8361e44468f9e9d7843901e1"
  end

  def install
    virtualenv_install_with_resources
  end

  test do
    (testpath/"Snakefile").write <<~EOS
      rule testme:
          output:
               "test.out"
          shell:
               "touch {output}"
    EOS
    system "#{bin}/snakemake"
    assert_predicate testpath/"test.out", :exist?
  end
end