46 lines
1.9 KiB
Ruby
46 lines
1.9 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.22.tar.gz"
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sha256 "35e518cfa0ac2fbc57e422d380bdb5123c6335742dd7965b76c34c95f241b729"
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bottle do
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cellar :any_skip_relocation
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sha256 "31c196b7b7d312e6e700650da58ca61e7154b442ff89d69800003821d164f3d3" => :mojave
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sha256 "469c7756dc9eca0ed7ebd8a156af03da9352ac0358f2bcfd0eb3d346d00b6d51" => :high_sierra
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sha256 "607d100998ea30e170cf8660efd0db2ada0cf2aff0fc01d753b8f562780f1066" => :sierra
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sha256 "6b5c96a2c5847c0e6ecef931175082b90c4436d91fbcd7331cda92a9bb682bb5" => :el_capitan
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end
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depends_on "cmake" => :build
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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