homebrew-core/Formula/snakemake.rb

class Snakemake < Formula
  include Language::Python::Virtualenv

  desc "Pythonic workflow system"
  homepage "https://snakemake.readthedocs.io/"
  url "https://files.pythonhosted.org/packages/73/d7/b43b9bdd06ad85a541840840a470a232cdf2445e0221beb75ea427c905e6/snakemake-5.7.4.tar.gz"
  sha256 "11f2f00c505d928b91332056667d49c96ed1694bf78e798ce27613948d44a2a2"
  head "https://bitbucket.org/snakemake/snakemake.git"

  bottle do
    cellar :any_skip_relocation
    sha256 "9480de30b66d63c5d7f5cc954a9f669327db0493b1e761f54e99cfbd7a6a4f35" => :catalina
    sha256 "95bfb00ab216b6b099478a75451ec1019009c59bd640b876db77618cfe6069c6" => :mojave
    sha256 "02a6b1abbfdada4d8c6ee2575c29c6a49ed56820d2f8a4f208bf47270b0cc824" => :high_sierra
  end

  depends_on "python"

  resource "appdirs" do
    url "https://files.pythonhosted.org/packages/48/69/d87c60746b393309ca30761f8e2b49473d43450b150cb08f3c6df5c11be5/appdirs-1.4.3.tar.gz"
    sha256 "9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92"
  end

  resource "attrs" do
    url "https://files.pythonhosted.org/packages/98/c3/2c227e66b5e896e15ccdae2e00bbc69aa46e9a8ce8869cc5fa96310bf612/attrs-19.3.0.tar.gz"
    sha256 "f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72"
  end

  resource "certifi" do
    url "https://files.pythonhosted.org/packages/62/85/7585750fd65599e88df0fed59c74f5075d4ea2fe611deceb95dd1c2fb25b/certifi-2019.9.11.tar.gz"
    sha256 "e4f3620cfea4f83eedc95b24abd9cd56f3c4b146dd0177e83a21b4eb49e21e50"
  end

  resource "chardet" do
    url "https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz"
    sha256 "84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae"
  end

  resource "ConfigArgParse" do
    url "https://files.pythonhosted.org/packages/24/f2/91071498c99fdff7bf8bddb4b981e68bb095b6204233b5d9ce6747f97836/ConfigArgParse-0.15.1.tar.gz"
    sha256 "baaf0fd2c1c108d007f402dab5481ac5f12d77d034825bf5a27f8224757bd0ac"
  end

  resource "datrie" do
    url "https://files.pythonhosted.org/packages/f5/a2/49d6db3af61eb139fb8fa2cdff90a4789e8255d227baf8f9a1ec945b4aac/datrie-0.8.tar.gz"
    sha256 "bdd5da6ba6a97e7cd96eef2e7441c8d2ef890d04ba42694a41c7dffa3aca680c"
  end

  resource "docutils" do
    url "https://files.pythonhosted.org/packages/93/22/953e071b589b0b1fee420ab06a0d15e5aa0c7470eb9966d60393ce58ad61/docutils-0.15.2.tar.gz"
    sha256 "a2aeea129088da402665e92e0b25b04b073c04b2dce4ab65caaa38b7ce2e1a99"
  end

  resource "gitdb2" do
    url "https://files.pythonhosted.org/packages/c5/62/ed7205331e8d7cc377e2512cb32f8f8f075c0defce767551d0a76e102ce2/gitdb2-2.0.6.tar.gz"
    sha256 "1b6df1433567a51a4a9c1a5a0de977aa351a405cc56d7d35f3388bad1f630350"
  end

  resource "GitPython" do
    url "https://files.pythonhosted.org/packages/be/0f/b180ddaf91429d6ebd7d46d022c31522e05ce7631b41da3901d9e4338c64/GitPython-3.0.4.tar.gz"
    sha256 "3237caca1139d0a7aa072f6735f5fd2520de52195e0fa1d8b83a9b212a2498b2"
  end

  resource "idna" do
    url "https://files.pythonhosted.org/packages/ad/13/eb56951b6f7950cadb579ca166e448ba77f9d24efc03edd7e55fa57d04b7/idna-2.8.tar.gz"
    sha256 "c357b3f628cf53ae2c4c05627ecc484553142ca23264e593d327bcde5e9c3407"
  end

  resource "importlib-metadata" do
    url "https://files.pythonhosted.org/packages/5d/44/636bcd15697791943e2dedda0dbe098d8530a38d113b202817133e0b06c0/importlib_metadata-0.23.tar.gz"
    sha256 "aa18d7378b00b40847790e7c27e11673d7fed219354109d0e7b9e5b25dc3ad26"
  end

  resource "jsonschema" do
    url "https://files.pythonhosted.org/packages/43/52/0a4dabd8d42efe6bb039d61731cb20a73d5425e29be16a7a2003b923e542/jsonschema-3.1.1.tar.gz"
    sha256 "2fa0684276b6333ff3c0b1b27081f4b2305f0a36cf702a23db50edb141893c3f"
  end

  resource "more-itertools" do
    url "https://files.pythonhosted.org/packages/c2/31/45f61c8927c9550109f1c4b99ba3ca66d328d889a9c9853a808bff1c9fa0/more-itertools-7.2.0.tar.gz"
    sha256 "409cd48d4db7052af495b09dec721011634af3753ae1ef92d2b32f73a745f832"
  end

  resource "psutil" do
    url "https://files.pythonhosted.org/packages/47/ea/d3b6d6fd0b4a6c12984df652525f394e68c8678d2b05075219144eb3a1cf/psutil-5.6.4.tar.gz"
    sha256 "512e854d68f8b42f79b2c7864d997b39125baff9bcff00028ce43543867de7c4"
  end

  resource "pyrsistent" do
    url "https://files.pythonhosted.org/packages/30/86/53a88c0a57698fa228db29a4000c28f4124823010388cb7042fe6e2be8dd/pyrsistent-0.15.5.tar.gz"
    sha256 "eb6545dbeb1aa69ab1fb4809bfbf5a8705e44d92ef8fc7c2361682a47c46c778"
  end

  resource "PyYAML" do
    url "https://files.pythonhosted.org/packages/e3/e8/b3212641ee2718d556df0f23f78de8303f068fe29cdaa7a91018849582fe/PyYAML-5.1.2.tar.gz"
    sha256 "01adf0b6c6f61bd11af6e10ca52b7d4057dd0be0343eb9283c878cf3af56aee4"
  end

  resource "ratelimiter" do
    url "https://files.pythonhosted.org/packages/5b/e0/b36010bddcf91444ff51179c076e4a09c513674a56758d7cfea4f6520e29/ratelimiter-1.2.0.post0.tar.gz"
    sha256 "5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7"
  end

  resource "requests" do
    url "https://files.pythonhosted.org/packages/01/62/ddcf76d1d19885e8579acb1b1df26a852b03472c0e46d2b959a714c90608/requests-2.22.0.tar.gz"
    sha256 "11e007a8a2aa0323f5a921e9e6a2d7e4e67d9877e85773fba9ba6419025cbeb4"
  end

  resource "six" do
    url "https://files.pythonhosted.org/packages/dd/bf/4138e7bfb757de47d1f4b6994648ec67a51efe58fa907c1e11e350cddfca/six-1.12.0.tar.gz"
    sha256 "d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
  end

  resource "smmap2" do
    url "https://files.pythonhosted.org/packages/3b/ba/e49102b3e8ffff644edded25394b2d22ebe3e645f3f6a8139129c4842ffe/smmap2-2.0.5.tar.gz"
    sha256 "29a9ffa0497e7f2be94ca0ed1ca1aa3cd4cf25a1f6b4f5f87f74b46ed91d609a"
  end

  resource "urllib3" do
    url "https://files.pythonhosted.org/packages/ff/44/29655168da441dff66de03952880c6e2d17b252836ff1aa4421fba556424/urllib3-1.25.6.tar.gz"
    sha256 "9a107b99a5393caf59c7aa3c1249c16e6879447533d0887f4336dde834c7be86"
  end

  resource "wrapt" do
    url "https://files.pythonhosted.org/packages/23/84/323c2415280bc4fc880ac5050dddfb3c8062c2552b34c2e512eb4aa68f79/wrapt-1.11.2.tar.gz"
    sha256 "565a021fd19419476b9362b05eeaa094178de64f8361e44468f9e9d7843901e1"
  end

  resource "zipp" do
    url "https://files.pythonhosted.org/packages/57/dd/585d728479d97d25aeeb9aa470d36a4ad8d0ba5610f84e14770128ce6ff7/zipp-0.6.0.tar.gz"
    sha256 "3718b1cbcd963c7d4c5511a8240812904164b7f381b647143a89d3b98f9bcd8e"
  end

  def install
    virtualenv_install_with_resources
  end

  test do
    (testpath/"Snakefile").write <<~EOS
      rule testme:
          output:
               "test.out"
          shell:
               "touch {output}"
    EOS
    system "#{bin}/snakemake"
    assert_predicate testpath/"test.out", :exist?
  end
end