32 lines
1.1 KiB
Ruby
32 lines
1.1 KiB
Ruby
class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.10/samtools-1.10.tar.bz2"
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sha256 "7b9ec5f05d61ec17bd9a82927e45d8ef37f813f79eb03fe06c88377f1bd03585"
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bottle do
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cellar :any
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sha256 "53c31e536e1f0a98e2dba30eddb61a782bf14b45ebf12e56973788f3427c1bac" => :catalina
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sha256 "18abf7b1a130579066fa055116589cfc7ca4d20842408d7038470ebd612e8a85" => :mojave
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sha256 "b9be0c12847087c47e0a1d9776d77795d35f98ed3373963564453de15c40437a" => :high_sierra
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end
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depends_on "htslib"
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uses_from_macos "ncurses"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"samtools", "faidx", "test.fasta"
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assert_equal "U00096.2:1-70\t70\t15\t70\t71\n", (testpath/"test.fasta.fai").read
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end
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end
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