55 lines
1.8 KiB
Ruby
55 lines
1.8 KiB
Ruby
class Mmseqs2 < Formula
|
|
desc "Software suite for very fast protein sequence search and clustering"
|
|
homepage "https://mmseqs.org/"
|
|
url "https://github.com/soedinglab/MMseqs2/archive/2-23394.tar.gz"
|
|
version "2-23394"
|
|
sha256 "36763fff4c4de1ab6cfc37508a2ee9bd2f4b840e0c9415bd1214280f67b67072"
|
|
|
|
bottle do
|
|
cellar :any
|
|
sha256 "7bb4f65a43a6ef0f0aa9cc252e8fe531e2d506d2f9eb9e974f8615b651f6bed6" => :high_sierra
|
|
sha256 "b512f8115a044f9461a756c45b4820d788ee84b5921c7e76db31be97d84961c4" => :sierra
|
|
sha256 "6ad606c732041c883472316877d6145fb1958209e16688cbd9bcdf011127e197" => :el_capitan
|
|
end
|
|
|
|
depends_on "cmake" => :build
|
|
depends_on "gcc"
|
|
|
|
cxxstdlib_check :skip
|
|
|
|
fails_with :clang # needs OpenMP support
|
|
|
|
resource "documentation" do
|
|
url "https://github.com/soedinglab/MMseqs2.wiki.git",
|
|
:revision => "fda4cf3f63e4c5b01be9d6b66f6666e81cc8ca99"
|
|
end
|
|
|
|
def install
|
|
args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
|
|
args << "-DVERSION_OVERRIDE=#{version}"
|
|
|
|
args << "-DHAVE_SSE4_1=1" if build.bottle?
|
|
|
|
system "cmake", ".", *args
|
|
system "make", "install"
|
|
|
|
resource("documentation").stage { doc.install Dir["*"] }
|
|
pkgshare.install "examples"
|
|
bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
|
|
end
|
|
|
|
def caveats
|
|
unless Hardware::CPU.sse4?
|
|
"MMseqs2 requires at least SSE4.1 CPU instruction support. The binary will not work correctly."
|
|
end
|
|
end
|
|
|
|
test do
|
|
system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
|
|
system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
|
|
assert_predicate testpath/"res", :exist?
|
|
assert_predicate (testpath/"res").size, :positive?
|
|
assert_predicate testpath/"res.index", :exist?
|
|
assert_predicate (testpath/"res.index").size, :positive?
|
|
end
|
|
end
|