45 lines
1.8 KiB
Ruby
45 lines
1.8 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.16.tar.gz"
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sha256 "3ec2340031f95c897bd6290e37e390a36f24936c023d72fcf597d046e5a8cdeb"
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bottle do
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cellar :any_skip_relocation
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sha256 "64338c24d7fa0b5902dbd4c8f1bfb6e3d58e86013b04b6d75c26be22f3ae24f7" => :high_sierra
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sha256 "92c5a391925c16117986c71105d59166ad0649d1135f2ec1feaa2f7a278745c1" => :sierra
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sha256 "06fff16eb4c7725421617276cb3096f8eca33aa9d754aac68c02b0f9a6234b39" => :el_capitan
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end
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depends_on "cmake" => :build
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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