45 lines
1.8 KiB
Ruby
45 lines
1.8 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.21.tar.gz"
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sha256 "3f10e089c24d24f3066f3a58fa01bf356c4044e0a0bcab081b9bf1a8d946c9b1"
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bottle do
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cellar :any_skip_relocation
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sha256 "9ca0055330c8d56ac83eb84733173a3631626145289a277c500e27b4e6012233" => :high_sierra
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sha256 "37fa311f26d1d4ec2f8a2bc782007d4cce5c4e762932323a7e50600c026cf600" => :sierra
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sha256 "3487d71e213fa4c6b47247cb611f5a120487419d6e2d17eb39de555c0dbe8263" => :el_capitan
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end
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depends_on "cmake" => :build
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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