25 lines
745 B
Ruby
25 lines
745 B
Ruby
class PicardTools < Formula
|
|
desc "Tools for manipulating HTS data and formats"
|
|
homepage "https://broadinstitute.github.io/picard/"
|
|
url "https://github.com/broadinstitute/picard/releases/download/2.18.21/picard.jar"
|
|
sha256 "36e216986e5354920b6ea79289ae01c3117d10012020d46ce8e14f70d351365c"
|
|
|
|
bottle :unneeded
|
|
|
|
depends_on :java => "1.8+"
|
|
|
|
def install
|
|
libexec.install "picard.jar"
|
|
bin.write_jar_script libexec/"picard.jar", "picard"
|
|
end
|
|
|
|
test do
|
|
(testpath/"test.fasta").write <<~EOS
|
|
>U00096.2:1-70
|
|
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
|
|
CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
|
|
EOS
|
|
cmd = "#{bin}/picard NormalizeFasta I=test.fasta O=/dev/stdout"
|
|
assert_match "TCTCTG", shell_output(cmd)
|
|
end
|
|
end
|