30 lines
1 KiB
Ruby
30 lines
1 KiB
Ruby
class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "http://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz2"
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sha256 "be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6"
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bottle do
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cellar :any
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sha256 "15c9481d899d77e7d7eeb5c2d2cac09930fef9b28409ec9ea3ab57ec9cc70e87" => :high_sierra
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sha256 "35a9e6c69ed762ee9d5ba2966a484f3a13557dbf23ef897fee6ba7d6f9db5659" => :sierra
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sha256 "5fe4d1a962dd98c9c0497fa88da33f493fdec868a25e531def7c5506424571d0" => :el_capitan
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end
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depends_on "xz"
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def install
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system "./configure", "--prefix=#{prefix}"
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system "make", "install"
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pkgshare.install "test"
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end
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test do
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sam = pkgshare/"test/ce#1.sam"
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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