03471ad6c0
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing that are well suited for processing High Throughput Sequencing data Closes Homebrew/homebrew#9697. Signed-off-by: Jack Nagel <jacknagel@gmail.com>
32 lines
764 B
Ruby
32 lines
764 B
Ruby
require 'formula'
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class FastxToolkit < Formula
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homepage 'http://hannonlab.cshl.edu/fastx_toolkit/'
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url 'http://hannonlab.cshl.edu/fastx_toolkit/fastx_toolkit-0.0.13.tar.bz2'
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md5 '6d233ff4ae3d52c457d447179f073a56'
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depends_on 'pkg-config' => :build
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depends_on 'libgtextutils'
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def install
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system "./configure", "--disable-debug",
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"--disable-dependency-tracking",
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"--prefix=#{prefix}"
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system "make install"
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end
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def test
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fixture = <<-EOS.undent
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>MY-ID
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AAAAAGGGGG
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CCCCCTTTTT
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AGCTN
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EOS
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expect = <<-EOS.undent
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>MY-ID
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AAAAAGGGGGCCCCCTTTTTAGCTN
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EOS
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actual = `echo "#{fixture}" | #{bin}/fasta_formatter`
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actual == expect
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end
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end
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