30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2"
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sha256 "c942bc1d9b85fd1b05ea79c5afd2805d489cd36b2c2d8517462682a4d779be16"
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bottle do
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cellar :any
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sha256 "4683ff94610e9bb6e58a26c0d71410fe3570e5225410acda302dbfe00ea7e274" => :high_sierra
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sha256 "46d52a403e444fae04968e36331ca11b922289603d0a0c6a133f1544c17e13b3" => :sierra
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sha256 "50730568acf901ed0635ce71503aa225eb17e87b07b8f55ddb60ff2b43cae54e" => :el_capitan
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end
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depends_on "htslib"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"samtools", "faidx", "test.fasta"
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assert_equal "U00096.2:1-70\t70\t15\t70\t71\n", (testpath/"test.fasta.fai").read
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end
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end
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