35 lines
1.2 KiB
Ruby
35 lines
1.2 KiB
Ruby
class Snakemake < Formula
|
|
desc "Pythonic workflow system"
|
|
homepage "https://bitbucket.org/snakemake/snakemake/wiki/Home"
|
|
url "https://pypi.python.org/packages/source/s/snakemake/snakemake-3.5.5.tar.gz"
|
|
sha256 "1f13667fd0dea7d2f35414399646288b8aece2cf9791566992001d95d123eb1b"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "782c11c3d9aa78d79cc6241bac326baae5a56d53f0e3e878e03539b0c1032017" => :el_capitan
|
|
sha256 "75d1e54fa745a3ae4bceacd30521e696789782b03465462b914ce8f06fc01018" => :yosemite
|
|
sha256 "a5bb0c91f5632b86e0684545fe36600349ced8643e0d98034c62eaf97580ce55" => :mavericks
|
|
end
|
|
|
|
depends_on :python3
|
|
|
|
def install
|
|
xy = Language::Python.major_minor_version "python3"
|
|
ENV.prepend_create_path "PYTHONPATH", libexec/"lib/python#{xy}/site-packages"
|
|
system "python3", *Language::Python.setup_install_args(libexec)
|
|
|
|
bin.install Dir[libexec/"bin/*"]
|
|
bin.env_script_all_files(libexec/"bin", :PYTHONPATH => ENV["PYTHONPATH"])
|
|
end
|
|
|
|
test do
|
|
(testpath/"Snakefile").write <<-EOS.undent
|
|
rule testme:
|
|
output:
|
|
"test.out"
|
|
shell:
|
|
"touch {output}"
|
|
EOS
|
|
system "#{bin}/snakemake"
|
|
end
|
|
end
|